KEGG   PATHWAY: ocr03430
Entry
ocr03430                    Pathway                                
Name
Mismatch repair - Ochrobactrum sp. MT180101
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ocr03430  Mismatch repair
ocr03430

Other DBs
GO: 0006298
Organism
Ochrobactrum sp. MT180101 [GN:ocr]
Gene
HGK82_13195  mutS; DNA mismatch repair protein MutS [KO:K03555]
HGK82_18370  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
HGK82_06405  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
HGK82_07490  UvrD-helicase domain-containing protein [KO:K03657] [EC:5.6.2.4]
HGK82_18105  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
HGK82_01990  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
HGK82_06305  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
HGK82_04940  ssb; single-stranded DNA-binding protein [KO:K03111]
HGK82_04130  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
HGK82_12420  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
HGK82_12505  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
HGK82_11675  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
HGK82_05520  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
HGK82_09520  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
HGK82_11745  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
HGK82_03115  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
HGK82_07540  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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