KEGG   PATHWAY: oed00020
Entry
oed00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ostrea edulis (European flat oyster)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oed00020  Citrate cycle (TCA cycle)
oed00020

Module
oed_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oed00020]
oed_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:oed00020]
oed_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oed00020]
oed_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:oed00020]
oed_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oed00020]
Other DBs
GO: 0006099
Organism
Ostrea edulis (European flat oyster) [GN:oed]
Gene
125666250  citrate synthase, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
125677005  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
125661323  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
125646637  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
125648050  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
125680764  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
125657114  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
125650201  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
125668059  2-oxoglutarate dehydrogenase complex component E1-like isoform X1 [KO:K00164] [EC:1.2.4.2]
125651567  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X2 [KO:K00658] [EC:2.3.1.61]
125655615  dihydrolipoyl dehydrogenase, mitochondrial-like isoform X1 [KO:K00382] [EC:1.8.1.4]
125658234  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like isoform X3 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
125653956  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
125659158  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
125645684  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
125676619  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
125680822  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
125658045  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like isoform X1 [KO:K00237]
125663714  fumarate hydratase class I, aerobic-like [KO:K01676] [EC:4.2.1.2]
125650081  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
125652736  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
125674369  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
125648956  pyruvate carboxylase, mitochondrial-like isoform X1 [KO:K01958] [EC:6.4.1.1]
125664307  phosphoenolpyruvate carboxykinase [GTP]-like isoform X2 [KO:K01596] [EC:4.1.1.32]
125664347  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
125658612  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
125660492  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
125677244  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
125654998  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
125646070  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oed00010  Glycolysis / Gluconeogenesis
oed00053  Ascorbate and aldarate metabolism
oed00061  Fatty acid biosynthesis
oed00062  Fatty acid elongation
oed00071  Fatty acid degradation
oed00190  Oxidative phosphorylation
oed00220  Arginine biosynthesis
oed00250  Alanine, aspartate and glutamate metabolism
oed00280  Valine, leucine and isoleucine degradation
oed00350  Tyrosine metabolism
oed00470  D-Amino acid metabolism
oed00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system