KEGG   PATHWAY: oho00020
Entry
oho00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Owenweeksia hongkongensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oho00020  Citrate cycle (TCA cycle)
oho00020

Module
oho_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oho00020]
oho_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:oho00020]
oho_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oho00020]
oho_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:oho00020]
oho_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oho00020]
Other DBs
GO: 0006099
Organism
Owenweeksia hongkongensis [GN:oho]
Gene
Oweho_3089  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Oweho_1302  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Oweho_1301  aconitase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Oweho_0558  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
Oweho_2023  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
Oweho_0996  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00658] [EC:2.3.1.61]
Oweho_2024  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Oweho_0219  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Oweho_1797  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Oweho_1961  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Oweho_1963  2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Oweho_0795  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Oweho_0814  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Oweho_2662  menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Oweho_2664  succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
Oweho_2661  succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
Oweho_1627  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Oweho_0241  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Oweho_2935  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Oweho_3163  ATP-dependent phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Oweho_1766  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Oweho_2969  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit [KO:K00162] [EC:1.2.4.1]
Oweho_1765  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oho00010  Glycolysis / Gluconeogenesis
oho00053  Ascorbate and aldarate metabolism
oho00061  Fatty acid biosynthesis
oho00071  Fatty acid degradation
oho00190  Oxidative phosphorylation
oho00220  Arginine biosynthesis
oho00250  Alanine, aspartate and glutamate metabolism
oho00280  Valine, leucine and isoleucine degradation
oho00350  Tyrosine metabolism
oho00470  D-Amino acid metabolism
oho00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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