KEGG   PATHWAY: oke00020
Entry
oke00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oncorhynchus keta (chum salmon)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oke00020  Citrate cycle (TCA cycle)
oke00020

Module
oke_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oke00020]
oke_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:oke00020]
oke_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oke00020]
oke_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:oke00020]
oke_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oke00020]
Other DBs
GO: 0006099
Organism
Oncorhynchus keta (chum salmon) [GN:oke]
Gene
118359951  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
118360776  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
118400415  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
118370455  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
118365260  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
118357563  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
118402984  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
118372312  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
118365453  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
118391967  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
118384586  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
118386368  isocitrate dehydrogenase [NADP] cytoplasmic-like isoform X1 [KO:K00031] [EC:1.1.1.42]
127929364  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
118396743  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
118366957  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
118401209  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
118360130  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
118360664  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
127928977  idh3a; LOW QUALITY PROTEIN: isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
118389021  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
118379992  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
118393599  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
118377499  2-oxoglutarate dehydrogenase complex component E1-like isoform X1 [KO:K00164] [EC:1.2.4.2]
118362484  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
118374099  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
118396470  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
118359304  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
118395355  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
118362917  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
118386292  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
118388422  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
118366844  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
118400160  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
118371974  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
118381046  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
118400263  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
118381588  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like isoform X1 [KO:K00235] [EC:1.3.5.1]
118359776  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
118394942  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
118376223  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
118373670  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like [KO:K00237]
118397338  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like [KO:K00237]
127920277  fh; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
118365001  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
118389171  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
127918269  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
118380079  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
118390028  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
118391101  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
118385128  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
118379634  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
118390349  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
118361202  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
118371489  phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
118388919  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
118385037  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
118361709  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
118390452  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
118369785  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
118389433  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
118377129  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
118371843  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
118389736  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oke00010  Glycolysis / Gluconeogenesis
oke00053  Ascorbate and aldarate metabolism
oke00061  Fatty acid biosynthesis
oke00062  Fatty acid elongation
oke00071  Fatty acid degradation
oke00190  Oxidative phosphorylation
oke00220  Arginine biosynthesis
oke00250  Alanine, aspartate and glutamate metabolism
oke00280  Valine, leucine and isoleucine degradation
oke00350  Tyrosine metabolism
oke00470  D-Amino acid metabolism
oke00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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