KEGG   PATHWAY: oke00630
Entry
oke00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Oncorhynchus keta (chum salmon)
Class
Metabolism; Carbohydrate metabolism
Pathway map
oke00630  Glyoxylate and dicarboxylate metabolism
oke00630

Module
oke_M00621  Glycine cleavage system [PATH:oke00630]
oke_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:oke00630]
Other DBs
GO: 0046487 0043648
Organism
Oncorhynchus keta (chum salmon) [GN:oke]
Gene
118369604  acss1; acetyl-coenzyme A synthetase 2-like, mitochondrial isoform X1 [KO:K01895] [EC:6.2.1.1]
118361299  acetyl-coenzyme A synthetase, cytoplasmic-like isoform X1 [KO:K01895] [EC:6.2.1.1]
118364197  acetyl-coenzyme A synthetase, cytoplasmic-like isoform X1 [KO:K01895] [EC:6.2.1.1]
118376219  acetyl-coenzyme A synthetase, cytoplasmic-like [KO:K01895] [EC:6.2.1.1]
118380268  acetyl-coenzyme A synthetase 2-like, mitochondrial isoform X1 [KO:K01895] [EC:6.2.1.1]
118379786  acetyl-coenzyme A synthetase, cytoplasmic-like [KO:K01895] [EC:6.2.1.1]
118365001  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
118389171  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
127918269  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
118380079  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
118390028  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
118391101  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
118359951  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
118360776  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
118400415  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
118402984  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
118372312  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
118365453  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
118391967  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
118384586  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
118376780  acat2; acetyl-CoA acetyltransferase, cytosolic [KO:K00626] [EC:2.3.1.9]
118390117  acat1; acetyl-CoA acetyltransferase, mitochondrial [KO:K00626] [EC:2.3.1.9]
118393788  methylmalonyl-CoA epimerase, mitochondrial-like isoform X1 [KO:K05606] [EC:5.1.99.1]
118358903  methylmalonyl-CoA epimerase, mitochondrial-like [KO:K05606] [EC:5.1.99.1]
118379724  pcca; propionyl-CoA carboxylase alpha chain, mitochondrial [KO:K01965] [EC:6.4.1.3]
118382558  propionyl-CoA carboxylase beta chain, mitochondrial-like [KO:K01966] [EC:6.4.1.3 2.1.3.15]
118379100  pccb; propionyl-CoA carboxylase beta chain, mitochondrial [KO:K01966] [EC:6.4.1.3 2.1.3.15]
118398390  mmut; methylmalonyl-CoA mutase, mitochondrial [KO:K01847] [EC:5.4.99.2]
118386242  2-Hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
118371545  2-Hydroxyacid oxidase 2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
118368202  hao1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
118396300  cat; catalase isoform X1 [KO:K03781] [EC:1.11.1.6]
118389135  catalase-like isoform X7 [KO:K03781] [EC:1.11.1.6]
118365032  catalase-like [KO:K03781] [EC:1.11.1.6]
118363402  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
118376510  glyoxylate reductase/hydroxypyruvate reductase-like isoform X1 [KO:K00049] [EC:1.1.1.79 1.1.1.81]
127920857  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
127923444  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
118402955  pgp; glycerol-3-phosphate phosphatase [KO:K19269] [EC:3.1.3.18 3.1.3.48]
118374604  glycerol-3-phosphate phosphatase-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
118402371  agxtb; alanine--glyoxylate and serine--pyruvate aminotransferase b isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
118400705  agxta; alanine--glyoxylate and serine--pyruvate aminotransferase a [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
118402037  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
118394734  glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
118387573  glutamine synthetase-like isoform X1 [KO:K01915] [EC:6.3.1.2]
118372990  glulb; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
118358982  glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
118375323  shmt2; serine hydroxymethyltransferase, mitochondrial isoform X1 [KO:K00600] [EC:2.1.2.1]
127919016  LOW QUALITY PROTEIN: serine hydroxymethyltransferase, cytosolic-like [KO:K00600] [EC:2.1.2.1]
118393015  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
118358145  gldc; glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
118371814  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
118396470  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
118359304  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
118401173  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
118393853  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
118396760  gcsha; glycine cleavage system protein H (aminomethyl carrier), a [KO:K02437]
118359305  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
118373893  hyi; putative hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
118389625  glycerate kinase-like [KO:K11529] [EC:2.7.1.165]
127932411  hoga1; 4-hydroxy-2-oxoglutarate aldolase, mitochondrial [KO:K18123] [EC:4.1.3.16]
118377765  afmid; kynurenine formamidase isoform X1 [KO:K01432] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
oke00010  Glycolysis / Gluconeogenesis
oke00020  Citrate cycle (TCA cycle)
oke00030  Pentose phosphate pathway
oke00053  Ascorbate and aldarate metabolism
oke00071  Fatty acid degradation
oke00230  Purine metabolism
oke00250  Alanine, aspartate and glutamate metabolism
oke00260  Glycine, serine and threonine metabolism
oke00620  Pyruvate metabolism
oke00750  Vitamin B6 metabolism
oke00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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