KEGG   PATHWAY: oki00020
Entry
oki00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oncorhynchus kisutch (coho salmon)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oki00020  Citrate cycle (TCA cycle)
oki00020

Module
oki_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oki00020]
oki_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:oki00020]
oki_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oki00020]
oki_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:oki00020]
oki_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oki00020]
Other DBs
GO: 0006099
Organism
Oncorhynchus kisutch (coho salmon) [GN:oki]
Gene
109869003  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
109891220  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
109908208  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
109891918  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
109897288  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
109881689  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
109898583  aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
109870152  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
109899993  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
109897317  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
109881004  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
109867781  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
109889376  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
109877235  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
109881709  isocitrate dehydrogenase [NADP] cytoplasmic-like isoform X1 [KO:K00031] [EC:1.1.1.42]
116362575  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
109867279  idh2; isocitrate dehydrogenase [NADP], mitochondrial isoform X1 [KO:K00031] [EC:1.1.1.42]
109884749  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
109869155  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
109892195  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
109887235  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
109882993  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
109908320  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
109868250  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
109873776  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
109884275  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
109881454  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
109894507  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
109882951  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
109904051  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
109897784  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
109867126  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
109900414  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109894194  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109897093  suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X3 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109868712  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109891006  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109870881  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109907164  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X2 [KO:K00234] [EC:1.3.5.1]
109877317  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
109877528  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
109903427  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
109868920  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X2 [KO:K00235] [EC:1.3.5.1]
109890222  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
109896096  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
109872272  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like isoform X1 [KO:K00236]
109874962  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
109909059  sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
109905604  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like [KO:K00237]
116359724  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
116364471  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
116372076  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
109889110  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
109865683  malate dehydrogenase, cytoplasmic isoform X2 [KO:K00025] [EC:1.1.1.37]
109885003  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
109892800  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
109872651  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
109885465  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
109872945  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
109874420  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
109891130  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
109909780  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
109899349  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
109898999  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X2 [KO:K00161] [EC:1.2.4.1]
109909898  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
109872568  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
109873622  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
109891677  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
109881511  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
109873348  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
109877917  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oki00010  Glycolysis / Gluconeogenesis
oki00053  Ascorbate and aldarate metabolism
oki00061  Fatty acid biosynthesis
oki00062  Fatty acid elongation
oki00071  Fatty acid degradation
oki00190  Oxidative phosphorylation
oki00220  Arginine biosynthesis
oki00250  Alanine, aspartate and glutamate metabolism
oki00280  Valine, leucine and isoleucine degradation
oki00350  Tyrosine metabolism
oki00470  D-Amino acid metabolism
oki00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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