KEGG   PATHWAY: oki00630
Entry
oki00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Oncorhynchus kisutch (coho salmon)
Class
Metabolism; Carbohydrate metabolism
Pathway map
oki00630  Glyoxylate and dicarboxylate metabolism
oki00630

Module
oki_M00621  Glycine cleavage system [PATH:oki00630]
oki_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:oki00630]
Other DBs
GO: 0046487 0043648
Organism
Oncorhynchus kisutch (coho salmon) [GN:oki]
Gene
109880792  acetyl-coenzyme A synthetase, cytoplasmic-like [KO:K01895] [EC:6.2.1.1]
109869323  acetyl-coenzyme A synthetase, cytoplasmic isoform X1 [KO:K01895] [EC:6.2.1.1]
109889853  acss1; acetyl-coenzyme A synthetase 2-like, mitochondrial isoform X1 [KO:K01895] [EC:6.2.1.1]
109881560  acetyl-coenzyme A synthetase, cytoplasmic-like [KO:K01895] [EC:6.2.1.1]
109907850  acetyl-coenzyme A synthetase, cytoplasmic isoform X1 [KO:K01895] [EC:6.2.1.1]
109879626  acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
116372076  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
109889110  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
109865683  malate dehydrogenase, cytoplasmic isoform X2 [KO:K00025] [EC:1.1.1.37]
109885003  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
109892800  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
109872651  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
109869003  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
109891220  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
109908208  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
109898583  aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
109870152  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
109899993  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
109897317  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
109881004  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
109872993  acat1; acetyl-CoA acetyltransferase, mitochondrial [KO:K00626] [EC:2.3.1.9]
109866314  acat2; acetyl-CoA acetyltransferase, cytosolic [KO:K00626] [EC:2.3.1.9]
109886769  mcee; methylmalonyl-CoA epimerase, mitochondrial isoform X1 [KO:K05606] [EC:5.1.99.1]
109895448  methylmalonyl-CoA epimerase, mitochondrial-like [KO:K05606] [EC:5.1.99.1]
109879479  propionyl-CoA carboxylase alpha chain, mitochondrial-like [KO:K01965] [EC:6.4.1.3]
116364163  LOW QUALITY PROTEIN: propionyl-CoA carboxylase alpha chain, mitochondrial-like [KO:K01965] [EC:6.4.1.3]
116354011  propionyl-CoA carboxylase beta chain, mitochondrial-like [KO:K01966] [EC:6.4.1.3 2.1.3.15]
109883523  propionyl-CoA carboxylase beta chain, mitochondrial [KO:K01966] [EC:6.4.1.3 2.1.3.15]
109900985  mmut; methylmalonyl-CoA mutase, mitochondrial isoform X2 [KO:K01847] [EC:5.4.99.2]
109871358  hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
109903081  hydroxyacid oxidase 2-like isoform X8 [KO:K11517] [EC:1.1.3.15]
109904137  hao1; hydroxyacid oxidase 1 isoform X2 [KO:K11517] [EC:1.1.3.15]
109889977  catalase isoform X1 [KO:K03781] [EC:1.11.1.6]
109865651  catalase-like [KO:K03781] [EC:1.11.1.6]
109867216  catalase isoform X1 [KO:K03781] [EC:1.11.1.6]
109905102  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
116371699  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
109864934  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
116360193  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
109881853  agxt; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
109875060  serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
109868556  glutamine synthetase isoform X1 [KO:K01915] [EC:6.3.1.2]
109898074  glutamine synthetase, mitochondrial [KO:K01915] [EC:6.3.1.2]
109872039  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
109902764  glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
109874684  glutamine synthetase isoform X2 [KO:K01915] [EC:6.3.1.2]
116371563  shmt1; serine hydroxymethyltransferase, cytosolic isoform X1 [KO:K00600] [EC:2.1.2.1]
109899743  shmt2; serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
116359926  serine hydroxymethyltransferase, cytosolic-like isoform X1 [KO:K00600] [EC:2.1.2.1]
109877406  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
109895729  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
109869295  amt; aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
109908575  aminomethyltransferase, mitochondrial-like isoform X2 [KO:K00605] [EC:2.1.2.10]
109897784  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
109867126  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
109887579  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
109889407  glycine cleavage system H protein, mitochondrial [KO:K02437]
109895401  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
109867396  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
109902771  hyi; putative hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
109898525  glyctk; glycerate kinase isoform X1 [KO:K11529] [EC:2.7.1.165]
109877035  4-hydroxy-2-oxoglutarate aldolase, mitochondrial isoform X1 [KO:K18123] [EC:4.1.3.16]
116366566  kynurenine formamidase-like [KO:K01432] [EC:3.5.1.9]
109885460  kynurenine formamidase isoform X1 [KO:K01432] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
oki00010  Glycolysis / Gluconeogenesis
oki00020  Citrate cycle (TCA cycle)
oki00030  Pentose phosphate pathway
oki00053  Ascorbate and aldarate metabolism
oki00071  Fatty acid degradation
oki00230  Purine metabolism
oki00250  Alanine, aspartate and glutamate metabolism
oki00260  Glycine, serine and threonine metabolism
oki00620  Pyruvate metabolism
oki00750  Vitamin B6 metabolism
oki00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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