KEGG   PATHWAY: ola00020
Entry
ola00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oryzias latipes (Japanese medaka)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ola00020  Citrate cycle (TCA cycle)
ola00020

Module
ola_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ola00020]
ola_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ola00020]
ola_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ola00020]
ola_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ola00020]
ola_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ola00020]
Other DBs
GO: 0006099
Organism
Oryzias latipes (Japanese medaka) [GN:ola]
Gene
101155930  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
101170190  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
101160440  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
101164929  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
101170501  aco1; cytoplasmic aconitate hydratase isoform X2 [KO:K01681] [EC:4.2.1.3]
101166704  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
101171328  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
101166544  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
101169534  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
101156895  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
101164134  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
101171674  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
101160253  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
101166427  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
101168947  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
101158169  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
101170834  suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
101161764  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
101169635  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
101170091  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X2 [KO:K00235] [EC:1.3.5.1]
101171309  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
101162241  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
101167814  sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
101159576  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
100302445  mdh1; cytosolic malate dehydrogenase A [KO:K00025] [EC:1.1.1.37]
100049475  mdhb; cytosolic malate dehydrogenase B [KO:K00025] [EC:1.1.1.37]
101166000  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101170548  pc; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
101158145  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
101165911  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
101174054  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X4 [KO:K00161] [EC:1.2.4.1]
100049362  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
101165830  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ola00010  Glycolysis / Gluconeogenesis
ola00053  Ascorbate and aldarate metabolism
ola00061  Fatty acid biosynthesis
ola00062  Fatty acid elongation
ola00071  Fatty acid degradation
ola00190  Oxidative phosphorylation
ola00220  Arginine biosynthesis
ola00250  Alanine, aspartate and glutamate metabolism
ola00280  Valine, leucine and isoleucine degradation
ola00350  Tyrosine metabolism
ola00470  D-Amino acid metabolism
ola00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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