KEGG   PATHWAY: ole00020
Entry
ole00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Horticoccus luteus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ole00020  Citrate cycle (TCA cycle)
ole00020

Module
ole_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ole00020]
ole_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ole00020]
ole_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ole00020]
ole_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ole00020]
Other DBs
GO: 0006099
Organism
Horticoccus luteus [GN:ole]
Gene
K0B96_11810  citrate synthase [KO:K01647] [EC:2.3.3.1]
K0B96_09020  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
K0B96_05665  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K0B96_04440  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K0B96_04435  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K0B96_04430  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K0B96_06020  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K0B96_11225  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K0B96_11220  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K0B96_01350  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K0B96_01355  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K0B96_01345  succinate dehydrogenase cytochrome b subunit [KO:K00241]
K0B96_12400  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K0B96_02850  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K0B96_01730  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K0B96_00430  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
K0B96_08760  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
K0B96_05160  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
K0B96_05155  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
K0B96_05150  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ole00010  Glycolysis / Gluconeogenesis
ole00053  Ascorbate and aldarate metabolism
ole00061  Fatty acid biosynthesis
ole00071  Fatty acid degradation
ole00190  Oxidative phosphorylation
ole00220  Arginine biosynthesis
ole00250  Alanine, aspartate and glutamate metabolism
ole00280  Valine, leucine and isoleucine degradation
ole00350  Tyrosine metabolism
ole00470  D-Amino acid metabolism
ole00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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