KEGG   PATHWAY: oli00020
Entry
oli00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Olivibacter sp. LS-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oli00020  Citrate cycle (TCA cycle)
oli00020

Module
oli_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oli00020]
oli_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:oli00020]
oli_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oli00020]
oli_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:oli00020]
oli_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oli00020]
Other DBs
GO: 0006099
Organism
Olivibacter sp. LS-1 [GN:oli]
Gene
FKG96_15365  citrate synthase [KO:K01647] [EC:2.3.3.1]
FKG96_08215  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FKG96_24175  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FKG96_13540  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FKG96_25415  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FKG96_05360  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FKG96_05365  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FKG96_09740  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
FKG96_05390  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FKG96_14980  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FKG96_09120  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FKG96_14480  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FKG96_05495  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
FKG96_03955  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FKG96_03950  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FKG96_22010  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FKG96_03960  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FKG96_04560  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FKG96_16840  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FKG96_08285  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
FKG96_12885  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FKG96_02690  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FKG96_03495  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FKG96_02695  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oli00010  Glycolysis / Gluconeogenesis
oli00053  Ascorbate and aldarate metabolism
oli00061  Fatty acid biosynthesis
oli00071  Fatty acid degradation
oli00190  Oxidative phosphorylation
oli00220  Arginine biosynthesis
oli00250  Alanine, aspartate and glutamate metabolism
oli00280  Valine, leucine and isoleucine degradation
oli00350  Tyrosine metabolism
oli00470  D-Amino acid metabolism
oli00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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