KEGG   PATHWAY: oma03030
Entry
oma03030                    Pathway                                
Name
DNA replication - Oenanthe melanoleuca (Eastern black-eared wheatear)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
oma03030  DNA replication
oma03030

Organism
Oenanthe melanoleuca (Eastern black-eared wheatear) [GN:oma]
Gene
130248704  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
130250739  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
130260771  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
130261899  PCNA; proliferating cell nuclear antigen [KO:K04802]
130254786  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
130253684  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
130256623  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
130262729  POLA2; DNA polymerase alpha subunit B [KO:K02321]
130265711  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
130251715  PRIM2; DNA primase large subunit [KO:K02685]
130261862  POLD2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
130257388  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
130253391  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
130259818  POLE; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
130253542  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
130260064  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
130264373  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
130258458  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
130251635  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
130266870  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
130248430  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
130255734  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
130262212  RPA2; replication protein A 32 kDa subunit [KO:K10739]
130250404  RPA3; replication protein A 14 kDa subunit [KO:K10740]
130252038  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
130261003  RFC2; replication factor C subunit 2 [KO:K10755]
130257010  RFC4; replication factor C subunit 4 [KO:K10755]
130259372  RFC3; replication factor C subunit 3 [KO:K10756]
130259776  RFC5; replication factor C subunit 5 isoform X1 [KO:K10756]
130256435  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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