KEGG   PATHWAY: ops00020
Entry
ops00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella pseudogrignonensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ops00020  Citrate cycle (TCA cycle)
ops00020

Module
ops_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ops00020]
ops_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ops00020]
ops_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ops00020]
ops_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ops00020]
ops_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ops00020]
Other DBs
GO: 0006099
Organism
Brucella pseudogrignonensis [GN:ops]
Gene
A8A54_04695  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
A8A54_05350  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A8A54_00230  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
A8A54_22675  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A8A54_05585  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A8A54_17120  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A8A54_17115  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A8A54_05235  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A8A54_13960  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A8A54_17095  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A8A54_17125  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A8A54_17130  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A8A54_04890  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
A8A54_17025  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A8A54_17020  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A8A54_17035  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A8A54_17030  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A8A54_04325  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A8A54_09760  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
A8A54_17135  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A8A54_09070  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
A8A54_18985  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
A8A54_17590  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A8A54_05255  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A8A54_05250  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
A8A54_05245  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ops00010  Glycolysis / Gluconeogenesis
ops00053  Ascorbate and aldarate metabolism
ops00061  Fatty acid biosynthesis
ops00071  Fatty acid degradation
ops00190  Oxidative phosphorylation
ops00220  Arginine biosynthesis
ops00250  Alanine, aspartate and glutamate metabolism
ops00280  Valine, leucine and isoleucine degradation
ops00350  Tyrosine metabolism
ops00470  D-Amino acid metabolism
ops00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system