KEGG   PATHWAY: otu00020
Entry
otu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Onthophagus taurus (bull-headed dung beetle)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
otu00020  Citrate cycle (TCA cycle)
otu00020

Module
otu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:otu00020]
otu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:otu00020]
otu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:otu00020]
otu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:otu00020]
otu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:otu00020]
Other DBs
GO: 0006099
Organism
Onthophagus taurus (bull-headed dung beetle) [GN:otu]
Gene
111416838  probable citrate synthase 1, mitochondrial [KO:K01647] [EC:2.3.3.1]
111416842  probable citrate synthase 1, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
111417043  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
111427669  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
111421427  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111417359  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
111427402  cytosolic isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
111414061  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
111427379  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
111413947  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111414469  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
111425162  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
111417186  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
111414724  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
111422818  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
111429238  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
111421827  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111421836  uncharacterized protein LOC111421836 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111414949  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111417817  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111428216  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111414163  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111426143  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
111421948  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
111414354  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111414415  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111429075  uncharacterized protein LOC111429075 [KO:K00236]
111416621  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
111419432  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
111422819  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
111414685  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
111414686  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
111414870  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
111423720  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
111426136  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
111427006  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
111418228  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111428206  uncharacterized protein LOC111428206 [KO:K00026] [EC:1.1.1.37]
111413175  uncharacterized protein LOC111413175 [KO:K00026] [EC:1.1.1.37]
111418061  pyruvate carboxylase 1-like [KO:K01958] [EC:6.4.1.1]
111418065  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
111417673  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
111413552  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
111413739  uncharacterized protein LOC111413739 isoform X1 [KO:K01596] [EC:4.1.1.32]
111413740  uncharacterized protein LOC111413740 isoform X1 [KO:K01596] [EC:4.1.1.32]
111426056  pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
111422866  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
111428449  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
111429422  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
111426530  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
otu00010  Glycolysis / Gluconeogenesis
otu00053  Ascorbate and aldarate metabolism
otu00061  Fatty acid biosynthesis
otu00062  Fatty acid elongation
otu00071  Fatty acid degradation
otu00190  Oxidative phosphorylation
otu00220  Arginine biosynthesis
otu00250  Alanine, aspartate and glutamate metabolism
otu00280  Valine, leucine and isoleucine degradation
otu00350  Tyrosine metabolism
otu00470  D-Amino acid metabolism
otu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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