KEGG   PATHWAY: pabi00020
Entry
pabi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pyrodictium abyssi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pabi00020  Citrate cycle (TCA cycle)
pabi00020

Module
pabi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pabi00020]
Other DBs
GO: 0006099
Organism
Pyrodictium abyssi [GN:pabi]
Gene
PABY_15330  hypothetical protein [KO:K05942] [EC:2.3.3.3]
PABY_15300  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
PABY_07530  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PABY_17110  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PABY_17120  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PABY_06670  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PABY_06660  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PABY_23050  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PABY_23020  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PABY_23040  hypothetical protein [KO:K00241]
PABY_23030  hypothetical protein [KO:K00242]
PABY_23070  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
PABY_23060  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
PABY_00150  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
PABY_14120  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
PABY_00140  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
PABY_14130  porB; pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
PABY_14100  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
PABY_00170  pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma [KO:K00189] [EC:1.2.7.7 1.2.7.1]
PABY_00160  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
PABY_14110  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pabi00010  Glycolysis / Gluconeogenesis
pabi00061  Fatty acid biosynthesis
pabi00071  Fatty acid degradation
pabi00190  Oxidative phosphorylation
pabi00220  Arginine biosynthesis
pabi00250  Alanine, aspartate and glutamate metabolism
pabi00280  Valine, leucine and isoleucine degradation
pabi00350  Tyrosine metabolism
pabi00470  D-Amino acid metabolism
pabi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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