KEGG   PATHWAY: pace00020
Entry
pace00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Syntrophotalea acetylenica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pace00020  Citrate cycle (TCA cycle)
pace00020

Module
pace_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pace00020]
pace_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pace00020]
pace_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pace00020]
Other DBs
GO: 0006099
Organism
Syntrophotalea acetylenica [GN:pace]
Gene
A6070_08690  type I citrate synthase [KO:K01647] [EC:2.3.3.1]
A6070_04370  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A6070_10100  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
A6070_02960  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
A6070_01530  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A6070_01525  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A6070_06385  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A6070_01780  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A6070_10130  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A6070_09540  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A6070_10135  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A6070_07440  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A6070_09535  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A6070_10140  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
A6070_07435  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
A6070_10125  tungsten formylmethanofuran dehydrogenase [KO:K00176] [EC:1.2.7.3]
A6070_07450  2-oxoacid:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
A6070_14560  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A6070_14565  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A6070_13720  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
A6070_13725  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
A6070_13715  fumarate reductase [KO:K00241]
A6070_14105  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
A6070_10105  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A6070_08535  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
A6070_01770  dehydrogenase [KO:K00627] [EC:2.3.1.12]
A6070_04930  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
A6070_04935  pyruvate synthase [KO:K00170] [EC:1.2.7.1]
A6070_04925  hypothetical protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pace00010  Glycolysis / Gluconeogenesis
pace00053  Ascorbate and aldarate metabolism
pace00061  Fatty acid biosynthesis
pace00190  Oxidative phosphorylation
pace00220  Arginine biosynthesis
pace00250  Alanine, aspartate and glutamate metabolism
pace00280  Valine, leucine and isoleucine degradation
pace00350  Tyrosine metabolism
pace00470  D-Amino acid metabolism
pace00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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