KEGG   PATHWAY: paeb00020
Entry
paeb00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas aeruginosa NCGM 1900
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
paeb00020  Citrate cycle (TCA cycle)
paeb00020

Module
paeb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:paeb00020]
paeb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:paeb00020]
paeb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:paeb00020]
paeb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:paeb00020]
paeb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:paeb00020]
Other DBs
GO: 0006099
Organism
Pseudomonas aeruginosa NCGM 1900 [GN:paeb]
Gene
NCGM1900_4995  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
NCGM1900_5016  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NCGM1900_4775  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCGM1900_3889  idh; monomeric isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NCGM1900_3890  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NCGM1900_4990  kgd; alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
NCGM1900_4989  sucB; dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
NCGM1900_4281  lpdV; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCGM1900_5567  lpd3; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCGM1900_4988  lpdG; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCGM1900_4986  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
NCGM1900_4987  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
NCGM1900_6300  psecoA; putative coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
NCGM1900_4992  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCGM1900_4991  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCGM1900_4994  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NCGM1900_4993  sdhD; succinate dehydrogenase D subunit [KO:K00242]
NCGM1900_2161  fumA; putative fumarase [KO:K01676] [EC:4.2.1.2]
NCGM1900_2301  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NCGM1900_1872  fumC2; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NCGM1900_2488  mqoB; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NCGM1900_2818  mqoA; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NCGM1900_6289  accC; acetyl-CoA carboxylase [KO:K01959] [EC:6.4.1.1]
NCGM1900_6288  oadA; pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
NCGM1900_5987  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
NCGM1900_5767  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
NCGM1900_5769  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
NCGM1900_0804  acoC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
paeb00010  Glycolysis / Gluconeogenesis
paeb00053  Ascorbate and aldarate metabolism
paeb00061  Fatty acid biosynthesis
paeb00071  Fatty acid degradation
paeb00190  Oxidative phosphorylation
paeb00220  Arginine biosynthesis
paeb00250  Alanine, aspartate and glutamate metabolism
paeb00280  Valine, leucine and isoleucine degradation
paeb00350  Tyrosine metabolism
paeb00470  D-Amino acid metabolism
paeb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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