KEGG   PATHWAY: paef00020
Entry
paef00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus sp. FSL R5-0345
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
paef00020  Citrate cycle (TCA cycle)
paef00020

Module
paef_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:paef00020]
paef_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:paef00020]
paef_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:paef00020]
paef_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:paef00020]
Other DBs
GO: 0006099
Organism
Paenibacillus sp. FSL R5-0345 [GN:paef]
Gene
R50345_09630  citrate synthase [KO:K01647] [EC:2.3.3.1]
R50345_02955  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
R50345_09635  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
R50345_01785  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
R50345_01780  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
R50345_16920  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
R50345_21385  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
R50345_03610  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
R50345_18900  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
R50345_18905  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
R50345_25575  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
R50345_25570  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
R50345_25580  succinate dehydrogenase [KO:K00241]
R50345_09670  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
R50345_09640  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
R50345_14280  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
R50345_16935  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
R50345_16930  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
R50345_16925  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
R50345_17345  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
R50345_17350  ferredoxin [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
paef00010  Glycolysis / Gluconeogenesis
paef00053  Ascorbate and aldarate metabolism
paef00061  Fatty acid biosynthesis
paef00071  Fatty acid degradation
paef00190  Oxidative phosphorylation
paef00220  Arginine biosynthesis
paef00250  Alanine, aspartate and glutamate metabolism
paef00280  Valine, leucine and isoleucine degradation
paef00350  Tyrosine metabolism
paef00470  D-Amino acid metabolism
paef00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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