KEGG   PATHWAY: paem00020
Entry
paem00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas aeruginosa MTB-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
paem00020  Citrate cycle (TCA cycle)
paem00020

Module
paem_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:paem00020]
paem_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:paem00020]
paem_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:paem00020]
paem_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:paem00020]
paem_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:paem00020]
Other DBs
GO: 0006099
Organism
Pseudomonas aeruginosa MTB-1 [GN:paem]
Gene
U769_17840  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
U769_17945  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
U769_16780  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
U769_12050  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
U769_12055  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
U769_17815  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
U769_17810  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
U769_26505  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
U769_17805  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
U769_13955  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
U769_17795  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
U769_17800  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
U769_29920  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
U769_17825  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
U769_17820  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
U769_17835  succinate dehydrogenase [KO:K00241]
U769_17830  succinate dehydrogenase [KO:K00242]
U769_23340  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
U769_24040  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
U769_21545  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
U769_07530  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
U769_25410  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
U769_29865  acetyl-CoA carboxylase subunit alpha [KO:K01959] [EC:6.4.1.1]
U769_29860  pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
U769_28605  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
U769_27450  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
U769_04085  acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
U769_27455  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
paem00010  Glycolysis / Gluconeogenesis
paem00053  Ascorbate and aldarate metabolism
paem00061  Fatty acid biosynthesis
paem00071  Fatty acid degradation
paem00190  Oxidative phosphorylation
paem00220  Arginine biosynthesis
paem00250  Alanine, aspartate and glutamate metabolism
paem00280  Valine, leucine and isoleucine degradation
paem00350  Tyrosine metabolism
paem00470  D-Amino acid metabolism
paem00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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