KEGG   PATHWAY: pai00020
Entry
pai00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pyrobaculum aerophilum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pai00020  Citrate cycle (TCA cycle)
pai00020

Module
pai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pai00020]
pai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pai00020]
pai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pai00020]
pai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pai00020]
Other DBs
GO: 0006099
Organism
Pyrobaculum aerophilum [GN:pai]
Gene
PAE3585  citrate synthase part 2, authentic frameshift [KO:K01647] [EC:2.3.3.1]
PAE1689  citrate synthase [KO:K01659] [EC:2.3.3.5]
PAE3584  citrate synthase part 1, authentic frameshift [KO:K01659] [EC:2.3.3.5]
PAE1499  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
PAE1651  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PAE2649  pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
PAE0939  2-oxoacid ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PAE1559  2-oxoacid ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PAE2736  2-oxoacid ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PAE0938  2-oxoacid ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PAE1558  2-oxoacid ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PAE2737  2-oxoacid ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PAE2313  succinyl-CoA synthetase alpha subunit (sucD) [KO:K01902] [EC:6.2.1.5]
PAE2312  succinyl-CoA synthetase beta subunit (sucC) [KO:K01903] [EC:6.2.1.5]
PAE0716  succinate dehydrogenase flavoprotein subunit (sdhA) [KO:K00239] [EC:1.3.5.1]
PAE0717  succinate dehydrogenase iron-sulfur subunit (sdhB) [KO:K00240] [EC:1.3.5.1]
PAE0718  succinate dehydrogenase cytochrome b subunit (sdhC) [KO:K00241]
PAE0719  succinate dehydrogenase subunit D (sdhD) [KO:K18860]
PAE2132  fumarate hydratase class I alpha subunit [KO:K01677] [EC:4.2.1.2]
PAE2131  fumarate hydratase class I beta subunit [KO:K01678] [EC:4.2.1.2]
PAE2743  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
PAE2370  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PAE2644  pyruvate dehydrogenase E1 alpha subunit [KO:K00161] [EC:1.2.4.1]
PAE2646  pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
PAE2648  pyruvate dehydrogenase E2 (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
PAE1042  pyruvate ferredoxin oxidoreductase alpha subunit (porA) [KO:K00169] [EC:1.2.7.1]
PAE3275  2-ketoacid ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
PAE1043  pyruvate ferredoxin oxidoreductase beta subunit (porB) [KO:K00170] [EC:1.2.7.1]
PAE3274  2-ketoacid ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
PAE1040  pyruvate ferredoxin oxidoreductase gamma subunit (porG) [KO:K00172] [EC:1.2.7.1]
PAE3279  2-ketoacid ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
PAE1041  pyruvate ferredoxin oxidoreductase delta subunit (porD) [KO:K00171] [EC:1.2.7.1]
PAE3276  2-ketoacid ferredoxin oxidoreductase delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pai00010  Glycolysis / Gluconeogenesis
pai00061  Fatty acid biosynthesis
pai00071  Fatty acid degradation
pai00190  Oxidative phosphorylation
pai00220  Arginine biosynthesis
pai00250  Alanine, aspartate and glutamate metabolism
pai00280  Valine, leucine and isoleucine degradation
pai00350  Tyrosine metabolism
pai00470  D-Amino acid metabolism
pai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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