KEGG   PATHWAY: paj00240
Entry
paj00240                    Pathway                                
Name
Pyrimidine metabolism - Pantoea ananatis AJ13355
Class
Metabolism; Nucleotide metabolism
Pathway map
paj00240  Pyrimidine metabolism
paj00240

Module
paj_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:paj00240]
paj_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:paj00240]
paj_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:paj00240]
paj_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:paj00240]
paj_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:paj00240]
Other DBs
GO: 0006220 0006213
Organism
Pantoea ananatis AJ13355 [GN:paj]
Gene
PAJ_0021  carB; carbamoyl-phosphate synthase large chain CarB [KO:K01955] [EC:6.3.5.5]
PAJ_0020  carA; carbamoyl-phosphate synthase small chain CarA [KO:K01956] [EC:6.3.5.5]
PAJ_3636  pyrB; aspartate carbamoyltransferase catalytic chain PyrB [KO:K00609] [EC:2.1.3.2]
PAJ_3635  pyrI; aspartate carbamoyltransferase regulatory chain PyrI [KO:K00610]
PAJ_0799  pyrC; pyrimidine biosynthesis dihydroorotase PyrC [KO:K01465] [EC:3.5.2.3]
PAJ_2716  dihydroorotase hypothetical protein [KO:K01465] [EC:3.5.2.3]
PAJ_2236  hypothetical protein [KO:K01465] [EC:3.5.2.3]
PAJ_0704  pyrD; dihydroorotate dehydrogenase PyrD [KO:K00254] [EC:1.3.5.2]
PAJ_3126  pyrE; orotate phosphoribosyltransferase PyrE [KO:K00762] [EC:2.4.2.10]
PAJ_1372  pyrF; orotidine 5'-phosphate decarboxylase PyrF [KO:K01591] [EC:4.1.1.23]
PAJ_0141  pyrH; uridylate kinase PyrH [KO:K09903] [EC:2.7.4.22]
PAJ_2149  ndk; nucleoside diphosphate kinase Ndk [KO:K00940] [EC:2.7.4.6]
PAJ_2351  mazG; protein MazG [KO:K04765] [EC:3.6.1.9]
PAJ_2788  yhdE; Maf-like protein YhdE [KO:K06287] [EC:3.6.1.-]
PAJ_2683  ygjP; metal-dependent hydrolase YgjP [KO:K07043] [EC:3.6.1.-]
PAJ_2350  pyrG; CTP synthase PyrG [KO:K01937] [EC:6.3.4.2]
PAJ_0675  cmk; cytidylate kinase Cmk [KO:K00945] [EC:2.7.4.25]
PAJ_1804  udk; uridine kinase Udk [KO:K00876] [EC:2.7.1.48]
PAJ_0362  ushA; protein UshA precursor [KO:K11751] [EC:3.1.3.5 3.6.1.45]
PAJ_2320  surE; multifunctional protein surE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
PAJ_0465  nagD; protein NagD [KO:K02566] [EC:3.1.3.5]
PAJ_3752  yjjG; 5'-nucleotidase YjjG [KO:K08723] [EC:3.1.3.-]
PAJ_3348  udp; uridine phosphorylase Udp [KO:K00757] [EC:2.4.2.3]
PAJ_0272  yaiE; cytoplasmic protein YaiE [KO:K09913] [EC:2.4.2.1 2.4.2.2]
PAJ_2113  upp; uracil phosphoribosyltransferase Upp [KO:K00761] [EC:2.4.2.9]
PAJ_2745  cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor CpdB [KO:K01119] [EC:3.1.4.16 3.1.3.6]
PAJ_2368  ygdH; decarboxylase family protein YgdH [KO:K06966] [EC:3.2.2.10 3.2.2.-]
PAJ_1830  cdd; cytidine deaminase Cdd [KO:K01489] [EC:3.5.4.5]
PAJ_2886  codA; cytosine deaminase CodA [KO:K01485] [EC:3.5.4.1 3.5.4.21]
PAJ_3622  nrdD; anaerobic ribonucleoside-triphosphate reductase NrdD [KO:K21636] [EC:1.1.98.6]
PAJ_1803  dcd; deoxycytidine triphosphate deaminase Dcd [KO:K01494] [EC:3.5.4.13]
PAJ_2265  nrdE; ribonucleoside-diphosphate reductase 2 alpha subunit NrdE [KO:K00525] [EC:1.17.4.1]
PAJ_1904  nrdA; ribonucleoside-diphosphate reductase 1 alpha subunit NrdA [KO:K00525] [EC:1.17.4.1]
PAJ_1905  nrdB; ribonucleoside-diphosphate reductase 1 beta subunit NrdB [KO:K00526] [EC:1.17.4.1]
PAJ_2266  nrdF; ribonucleoside-diphosphate reductase 2 beta subunit NrdF [KO:K00526] [EC:1.17.4.1]
PAJ_1927  yfbR; 5'-nucleotidase YfbR [KO:K08722] [EC:3.1.3.89]
PAJ_0834  tmk; thymidylate kinase Tmk [KO:K00943] [EC:2.7.4.9]
PAJ_3124  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut [KO:K01520] [EC:3.6.1.23]
PAJ_2547  deoA; thymidine phosphorylase DeoA [KO:K00758] [EC:2.4.2.4]
PAJ_1412  tdk; thymidine kinase Tdk [KO:K00857] [EC:2.7.1.21]
PAJ_2389  thyA; thymidylate synthase ThyA [KO:K00560] [EC:2.1.1.45]
PAJ_p0253  ycdM; putative monooxygenase YcdM [KO:K09018] [EC:1.14.99.46]
PAJ_p0248  ycdH; putative flavin:NADH reductase YcdH [KO:K09024] [EC:1.5.1.-]
PAJ_p0252  ycdL; isochorismatase family protein YcdL [KO:K09020] [EC:3.5.1.110]
PAJ_p0251  ycdK; translation initiation inhibitor [KO:K09021]
PAJ_p0250  ycdJ; b-ketoadipate enol-lactone hydrolase [KO:K09023] [EC:3.5.1.-]
PAJ_1297  ydfG; NADP-dependent L-serine/L-allo-threonine dehydrogenase YdfG [KO:K16066] [EC:1.1.1.381 1.1.1.-]
PAJ_3256  ycdI; putative NADH dehydrogenase/NAD(P)H nitroreductase YcdI [KO:K09019] [EC:1.1.1.-]
PAJ_p0249  ycdI; putative NADH dehydrogenase/NAD(P)H nitroreductase YcdI [KO:K09019] [EC:1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
paj00030  Pentose phosphate pathway
paj00220  Arginine biosynthesis
paj00250  Alanine, aspartate and glutamate metabolism
paj00280  Valine, leucine and isoleucine degradation
paj00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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