KEGG   PATHWAY: palc00020
Entry
palc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas alcaligenes
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
palc00020  Citrate cycle (TCA cycle)
palc00020

Module
palc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:palc00020]
palc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:palc00020]
palc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:palc00020]
palc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:palc00020]
palc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:palc00020]
Other DBs
GO: 0006099
Organism
Pseudomonas alcaligenes [GN:palc]
Gene
A0T30_11955  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A0T30_09930  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A0T30_13220  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
A0T30_11980  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
A0T30_11985  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A0T30_11990  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0T30_12000  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A0T30_11995  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A0T30_01180  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
A0T30_11970  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A0T30_11975  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A0T30_11960  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A0T30_11965  succinate dehydrogenase [KO:K00242]
A0T30_16570  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A0T30_14955  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A0T30_17250  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A0T30_01440  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
A0T30_01435  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
A0T30_03420  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
A0T30_04680  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A0T30_04675  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
palc00010  Glycolysis / Gluconeogenesis
palc00053  Ascorbate and aldarate metabolism
palc00061  Fatty acid biosynthesis
palc00071  Fatty acid degradation
palc00190  Oxidative phosphorylation
palc00220  Arginine biosynthesis
palc00250  Alanine, aspartate and glutamate metabolism
palc00280  Valine, leucine and isoleucine degradation
palc00350  Tyrosine metabolism
palc00470  D-Amino acid metabolism
palc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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