KEGG   PATHWAY: pap00020
Entry
pap00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas aeruginosa PA7
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pap00020  Citrate cycle (TCA cycle)
pap00020

Module
pap_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pap00020]
pap_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pap00020]
pap_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pap00020]
pap_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pap00020]
pap_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pap00020]
Other DBs
GO: 0006099
Organism
Pseudomonas aeruginosa PA7 [GN:pap]
Gene
PSPA7_3694  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
PSPA7_3768  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
PSPA7_3517  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PSPA7_2584  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
PSPA7_2583  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
PSPA7_3689  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
PSPA7_3688  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PSPA7_2991  lpdA2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSPA7_3687  lpdA1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSPA7_3685  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
PSPA7_3686  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
PSPA7_6235  putative coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
PSPA7_3691  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PSPA7_3690  sdhB; succinate dehydrogenase (B subunit) [KO:K00240] [EC:1.3.5.1]
PSPA7_3693  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PSPA7_3692  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PSPA7_4902  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
PSPA7_5084  fumC1; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PSPA7_4665  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
PSPA7_5289  mqo1; malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
PSPA7_1675  mqo2; malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
PSPA7_6224  accC1; acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
PSPA7_6223  oadA; oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
PSPA7_5935  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
PSPA7_5751  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
PSPA7_5752  aceF; dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
PSPA7_0935  putative hydrolase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pap00010  Glycolysis / Gluconeogenesis
pap00053  Ascorbate and aldarate metabolism
pap00061  Fatty acid biosynthesis
pap00071  Fatty acid degradation
pap00190  Oxidative phosphorylation
pap00220  Arginine biosynthesis
pap00250  Alanine, aspartate and glutamate metabolism
pap00280  Valine, leucine and isoleucine degradation
pap00350  Tyrosine metabolism
pap00470  D-Amino acid metabolism
pap00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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