KEGG   PATHWAY: para00630
Entry
para00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia sp. SOS3
Class
Metabolism; Carbohydrate metabolism
Pathway map
para00630  Glyoxylate and dicarboxylate metabolism
para00630

Module
para_M00012  Glyoxylate cycle [PATH:para00630]
para_M00621  Glycine cleavage system [PATH:para00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia sp. SOS3 [GN:para]
Gene
BTO02_09635  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
BTO02_14005  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
BTO02_31640  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
BTO02_19585  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
BTO02_09620  malate synthase A [KO:K01638] [EC:2.3.3.9]
BTO02_06675  malate synthase G [KO:K01638] [EC:2.3.3.9]
BTO02_20635  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BTO02_20600  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BTO02_03965  citrate synthase [KO:K01647] [EC:2.3.3.1]
BTO02_31595  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BTO02_20660  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BTO02_02010  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BTO02_12460  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BTO02_12495  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BTO02_24690  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BTO02_28770  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
BTO02_12490  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
BTO02_25460  (R)-hydratase [KO:K17865] [EC:4.2.1.55]
BTO02_25445  crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
BTO02_28940  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
BTO02_17545  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
BTO02_26545  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
BTO02_17550  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
BTO02_26550  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
BTO02_17555  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BTO02_26555  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BTO02_26955  catalase HPII [KO:K03781] [EC:1.11.1.6]
BTO02_27125  catalase [KO:K03781] [EC:1.11.1.6]
BTO02_17580  catalase [KO:K03781] [EC:1.11.1.6]
BTO02_06475  catalase [KO:K03781] [EC:1.11.1.6]
BTO02_05440  catalase [KO:K03781] [EC:1.11.1.6]
BTO02_21095  catalase [KO:K03781] [EC:1.11.1.6]
BTO02_10015  catalase [KO:K03781] [EC:1.11.1.6]
BTO02_24630  catalase [KO:K03781] [EC:1.11.1.6]
BTO02_04600  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
BTO02_01955  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BTO02_10175  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BTO02_10580  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BTO02_15350  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BTO02_15305  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
BTO02_18460  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BTO02_29750  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
BTO02_23570  rbcL; ribulose-bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
BTO02_23575  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
BTO02_22615  hypothetical protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BTO02_24325  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BTO02_16970  alanine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BTO02_32005  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BTO02_29025  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
BTO02_08905  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
BTO02_17090  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BTO02_00300  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
BTO02_00310  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
BTO02_09020  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTO02_13295  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTO02_31100  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTO02_00305  glycine cleavage system protein H [KO:K02437]
BTO02_12835  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
BTO02_12840  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
BTO02_11150  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
BTO02_04605  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
BTO02_12275  glycerate kinase [KO:K00865] [EC:2.7.1.165]
BTO02_06665  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
BTO02_21335  fumarate hydrolyase [KO:K03780] [EC:4.2.1.32]
BTO02_03295  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BTO02_10160  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BTO02_17840  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BTO02_15775  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
BTO02_15770  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
BTO02_24745  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
BTO02_24750  formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
BTO02_24755  formate dehydrogenase subunit beta [KO:K00124]
BTO02_15765  formate dehydrogenase [KO:K00124]
BTO02_24760  formate dehydrogenase subunit gamma [KO:K00127]
BTO02_15760  formate dehydrogenase [KO:K00127]
BTO02_03750  arylformamidase [KO:K07130] [EC:3.5.1.9]
BTO02_02770  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BTO02_25210  formamidase [KO:K01455] [EC:3.5.1.49]
BTO02_25580  amiF; formamidase [KO:K01455] [EC:3.5.1.49]
BTO02_25830  formamidase [KO:K01455] [EC:3.5.1.49]
BTO02_06025  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
BTO02_03685  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
BTO02_11405  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
BTO02_11400  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
BTO02_03690  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
BTO02_27015  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
para00010  Glycolysis / Gluconeogenesis
para00020  Citrate cycle (TCA cycle)
para00030  Pentose phosphate pathway
para00053  Ascorbate and aldarate metabolism
para00071  Fatty acid degradation
para00230  Purine metabolism
para00250  Alanine, aspartate and glutamate metabolism
para00260  Glycine, serine and threonine metabolism
para00620  Pyruvate metabolism
para00710  Carbon fixation by Calvin cycle
para00750  Vitamin B6 metabolism
para00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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