KEGG   PATHWAY: pare00020
Entry
pare00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pyrofollis japonicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pare00020  Citrate cycle (TCA cycle)
pare00020

Module
pare_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pare00020]
pare_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pare00020]
pare_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pare00020]
Other DBs
GO: 0006099
Organism
Pyrofollis japonicus [GN:pare]
Gene
PYJP_19620  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
PYJP_08340  hypothetical protein [KO:K05942] [EC:2.3.3.3]
PYJP_19640  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PYJP_19630  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
PYJP_01900  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PYJP_18920  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PYJP_01890  korB; 2-oxoglutarate synthase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PYJP_18930  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PYJP_01880  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
PYJP_01910  hypothetical protein [KO:K00176] [EC:1.2.7.3]
PYJP_07580  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PYJP_07570  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PYJP_16710  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PYJP_16680  hypothetical protein [KO:K00240] [EC:1.3.5.1]
PYJP_16700  hypothetical protein [KO:K00241]
PYJP_16690  hypothetical protein [KO:K00242]
PYJP_16660  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
PYJP_16670  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
PYJP_15720  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
PYJP_01320  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
PYJP_17470  2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
PYJP_01330  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
PYJP_17460  porB; pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
PYJP_17490  porC; pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
PYJP_01300  pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma [KO:K00189] [EC:1.2.7.7 1.2.7.1]
PYJP_01310  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
PYJP_17480  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pare00010  Glycolysis / Gluconeogenesis
pare00061  Fatty acid biosynthesis
pare00071  Fatty acid degradation
pare00190  Oxidative phosphorylation
pare00220  Arginine biosynthesis
pare00250  Alanine, aspartate and glutamate metabolism
pare00280  Valine, leucine and isoleucine degradation
pare00350  Tyrosine metabolism
pare00470  D-Amino acid metabolism
pare00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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