KEGG   PATHWAY: parg00630
Entry
parg00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Parageobacillus sp. KH3-4
Class
Metabolism; Carbohydrate metabolism
Pathway map
parg00630  Glyoxylate and dicarboxylate metabolism
parg00630

Module
parg_M00012  Glyoxylate cycle [PATH:parg00630]
parg_M00621  Glycine cleavage system [PATH:parg00630]
Other DBs
GO: 0046487 0043648
Organism
Parageobacillus sp. KH3-4 [GN:parg]
Gene
PspKH34_30620  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
PspKH34_06960  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PspKH34_07070  acsA; acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
PspKH34_15810  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
PspKH34_07410  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PspKH34_01670  citA; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
PspKH34_07390  citZ; citrate synthase 2 [KO:K01659] [EC:2.3.3.5]
PspKH34_24580  citB; aconitate hydratase A [KO:K27802] [EC:4.2.1.3 4.2.1.99]
PspKH34_37090  atoB; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PspKH34_24850  hypothetical protein [KO:K00626] [EC:2.3.1.9]
PspKH34_11680  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
PspKH34_11690  propionyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
PspKH34_11590  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
PspKH34_11600  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
PspKH34_15800  glcD; FAD-binding protein [KO:K00104] [EC:1.1.99.14]
PspKH34_34250  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
PspKH34_15780  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
PspKH34_15790  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
PspKH34_34240  glcF; putative glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
PspKH34_04400  katA; vegetative catalase [KO:K03781] [EC:1.11.1.6]
PspKH34_05100  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
PspKH34_15390  pfs; MTA/SAH nucleosidase [KO:K01091] [EC:3.1.3.18]
PspKH34_16980  glnA_1; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PspKH34_24790  glnA_2; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PspKH34_36770  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PspKH34_11030  gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 [KO:K00282] [EC:1.4.4.2]
PspKH34_11040  gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 [KO:K00283] [EC:1.4.4.2]
PspKH34_11020  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
PspKH34_14400  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PspKH34_11550  bfmbC; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PspKH34_27590  pdhD; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PspKH34_04760  gcvH; glycine cleavage system H protein [KO:K02437]
PspKH34_37770  glxK; glycerate kinase [KO:K00865] [EC:2.7.1.165]
PspKH34_37430  ycsA; putative tartrate dehydrogenase/decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PspKH34_21130  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PspKH34_17170  oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
PspKH34_32850  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
PspKH34_11740  cyclase [KO:K07130] [EC:3.5.1.9]
PspKH34_18620  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PspKH34_24140  acetamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
parg00010  Glycolysis / Gluconeogenesis
parg00020  Citrate cycle (TCA cycle)
parg00030  Pentose phosphate pathway
parg00053  Ascorbate and aldarate metabolism
parg00071  Fatty acid degradation
parg00230  Purine metabolism
parg00250  Alanine, aspartate and glutamate metabolism
parg00260  Glycine, serine and threonine metabolism
parg00620  Pyruvate metabolism
parg00710  Carbon fixation by Calvin cycle
parg00750  Vitamin B6 metabolism
parg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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