KEGG   PATHWAY: pars00630
Entry
pars00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paracoccus suum
Class
Metabolism; Carbohydrate metabolism
Pathway map
pars00630  Glyoxylate and dicarboxylate metabolism
pars00630

Module
pars_M00012  Glyoxylate cycle [PATH:pars00630]
pars_M00621  Glycine cleavage system [PATH:pars00630]
Other DBs
GO: 0046487 0043648
Organism
Paracoccus suum [GN:pars]
Gene
DRW48_04360  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
DRW48_13100  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
DRW48_10905  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
DRW48_12530  malate synthase G [KO:K01638] [EC:2.3.3.9]
DRW48_15150  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DRW48_08040  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DRW48_00595  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DRW48_05525  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
DRW48_11330  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
DRW48_13050  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
DRW48_04450  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
DRW48_04920  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
DRW48_03020  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
DRW48_03195  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
DRW48_00810  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
DRW48_09375  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
DRW48_15620  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
DRW48_15615  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
DRW48_15610  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
DRW48_03395  catalase [KO:K03781] [EC:1.11.1.6]
DRW48_15515  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
DRW48_06795  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
DRW48_06520  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
DRW48_12630  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
DRW48_00025  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
DRW48_12605  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
DRW48_12610  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
DRW48_06680  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
DRW48_04830  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
DRW48_00520  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
DRW48_00535  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
DRW48_12880  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
DRW48_03265  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
DRW48_03280  glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
DRW48_15195  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DRW48_15580  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DRW48_03275  gcvH; glycine cleavage system protein GcvH [KO:K02437]
DRW48_00295  glycerate kinase [KO:K11529] [EC:2.7.1.165]
DRW48_07770  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
DRW48_11075  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
DRW48_03700  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
DRW48_11070  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
DRW48_03695  fdxH; formate dehydrogenase subunit beta [KO:K00124]
DRW48_11065  formate dehydrogenase [KO:K00124]
DRW48_03690  formate dehydrogenase subunit gamma [KO:K00127]
DRW48_11060  formate dehydrogenase subunit gamma [KO:K00127]
DRW48_02420  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
DRW48_14320  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pars00010  Glycolysis / Gluconeogenesis
pars00020  Citrate cycle (TCA cycle)
pars00030  Pentose phosphate pathway
pars00053  Ascorbate and aldarate metabolism
pars00071  Fatty acid degradation
pars00230  Purine metabolism
pars00250  Alanine, aspartate and glutamate metabolism
pars00260  Glycine, serine and threonine metabolism
pars00620  Pyruvate metabolism
pars00710  Carbon fixation in photosynthetic organisms
pars00750  Vitamin B6 metabolism
pars00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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