KEGG   PATHWAY: past00020
Entry
past00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas asturiensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
past00020  Citrate cycle (TCA cycle)
past00020

Module
past_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:past00020]
past_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:past00020]
past_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:past00020]
past_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:past00020]
past_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:past00020]
Other DBs
GO: 0006099
Organism
Pseudomonas asturiensis [GN:past]
Gene
N015_16930  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
N015_17805  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
N015_09140  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
N015_11185  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
N015_16905  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
N015_16900  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
N015_16895  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N015_16885  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
N015_16890  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
N015_01350  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
N015_16915  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
N015_16910  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
N015_16925  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
N015_16920  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
N015_21330  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
N015_19340  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
N015_22075  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
N015_05505  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
N015_14990  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
N015_01130  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
N015_01135  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
N015_25525  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
N015_03130  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
N015_03125  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
past00010  Glycolysis / Gluconeogenesis
past00053  Ascorbate and aldarate metabolism
past00061  Fatty acid biosynthesis
past00071  Fatty acid degradation
past00190  Oxidative phosphorylation
past00220  Arginine biosynthesis
past00250  Alanine, aspartate and glutamate metabolism
past00280  Valine, leucine and isoleucine degradation
past00350  Tyrosine metabolism
past00470  D-Amino acid metabolism
past00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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