KEGG   PATHWAY: pax00020
Entry
pax00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cutibacterium acnes TypeIA2 P.acn31
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pax00020  Citrate cycle (TCA cycle)
pax00020

Module
pax_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pax00020]
pax_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pax00020]
pax_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pax00020]
pax_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pax00020]
Other DBs
GO: 0006099
Organism
Cutibacterium acnes TypeIA2 P.acn31 [GN:pax]
Gene
TIA2EST36_07070  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
TIA2EST36_11115  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
TIA2EST36_05250  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
TIA2EST36_08520  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
TIA2EST36_06245  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
TIA2EST36_06080  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TIA2EST36_09290  pyruvate:ferredoxin oxidoreductase (alpha subunit) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TIA2EST36_09295  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TIA2EST36_08600  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
TIA2EST36_08605  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
TIA2EST36_10025  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
TIA2EST36_04700  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
TIA2EST36_07145  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
TIA2EST36_04705  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
TIA2EST36_07140  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
TIA2EST36_04695  succinate dehydrogenase subunit C [KO:K00241]
TIA2EST36_07150  succinate dehydrogenase cytochrome B-558 subunit [KO:K00241]
TIA2EST36_11210  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
TIA2EST36_08530  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TIA2EST36_04890  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
TIA2EST36_03470  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
TIA2EST36_00825  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pax00010  Glycolysis / Gluconeogenesis
pax00053  Ascorbate and aldarate metabolism
pax00061  Fatty acid biosynthesis
pax00071  Fatty acid degradation
pax00190  Oxidative phosphorylation
pax00220  Arginine biosynthesis
pax00250  Alanine, aspartate and glutamate metabolism
pax00280  Valine, leucine and isoleucine degradation
pax00350  Tyrosine metabolism
pax00470  D-Amino acid metabolism
pax00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system