KEGG   PATHWAY: pbar00020
Entry
pbar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pogonomyrmex barbatus (red harvester ant)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pbar00020  Citrate cycle (TCA cycle)
pbar00020

Module
pbar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pbar00020]
pbar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pbar00020]
pbar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pbar00020]
pbar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pbar00020]
pbar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pbar00020]
Other DBs
GO: 0006099
Organism
Pogonomyrmex barbatus (red harvester ant) [GN:pbar]
Gene
105424280  LOW QUALITY PROTEIN: probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
105430777  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
105429784  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
105429940  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
105431932  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
105424542  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
105432675  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
105429201  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
105429918  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
105425263  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
105429054  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
105431176  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
105433432  succinyl-CoA ligase subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105423176  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105428901  LOW QUALITY PROTEIN: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105424715  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
105424751  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
105422192  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
105432904  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like isoform X1 [KO:K00235] [EC:1.3.5.1]
105431267  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
105432798  putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
105425961  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
105424381  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
105427801  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
105423435  malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
105422246  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
105426301  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
105434157  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
105423352  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
105434323  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
105433691  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
105431287  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
105423103  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pbar00010  Glycolysis / Gluconeogenesis
pbar00053  Ascorbate and aldarate metabolism
pbar00061  Fatty acid biosynthesis
pbar00062  Fatty acid elongation
pbar00071  Fatty acid degradation
pbar00190  Oxidative phosphorylation
pbar00220  Arginine biosynthesis
pbar00250  Alanine, aspartate and glutamate metabolism
pbar00280  Valine, leucine and isoleucine degradation
pbar00350  Tyrosine metabolism
pbar00470  D-Amino acid metabolism
pbar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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