KEGG   PATHWAY: pbl03018
Entry
pbl03018                    Pathway                                
Name
RNA degradation - Paracoccidioides lutzii Pb01
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pbl03018  RNA degradation
pbl03018

Other DBs
GO: 0006401
Organism
Paracoccidioides lutzii Pb01 [GN:pbl]
Gene
PAAG_02255  mRNA decapping hydrolase [KO:K12584] [EC:3.6.1.59]
PAAG_02583  hypothetical protein [KO:K07573]
PAAG_06024  exosome complex exonuclease RRP4 [KO:K03679]
PAAG_07441  exosome complex exonuclease RRP40 [KO:K03681]
PAAG_06166  3' exoribonuclease family protein [KO:K12586]
PAAG_03946  3' exoribonuclease family protein [KO:K12587]
PAAG_06270  hypothetical protein [KO:K12589]
PAAG_05787  3' exoribonuclease family [KO:K11600]
PAAG_03789  hypothetical protein [KO:K12590]
PAAG_05110  exosome complex exonuclease RRP45 [KO:K03678]
PAAG_03113  mitotic control protein dis3 [KO:K12585] [EC:3.1.13.-]
PAAG_07897  hypothetical protein [KO:K12591] [EC:3.1.13.-]
PAAG_01394  Poly(A) RNA polymerase cid14 [KO:K03514] [EC:2.7.7.19]
PAAG_06981  zinc knuckle domain-containing protein [KO:K12597]
PAAG_07594  ATP-dependent RNA helicase DOB1 [KO:K12598] [EC:5.6.2.6]
PAAG_01344  antiviral helicase SKI2 [KO:K12599] [EC:5.6.2.6]
PAAG_08361  hypothetical protein [KO:K12600]
PAAG_11087  PAAG_00318; ribosomal protein L32 [KO:K12601]
PAAG_07047  glucose-repressible alcohol dehydrogenase transcriptional effector [KO:K12603] [EC:3.1.13.4]
PAAG_01892  general negative regulator of transcription subunit 1 [KO:K12604]
PAAG_06342  general negative regulator of transcription subunit 2 [KO:K12605]
PAAG_03336  CCR4-NOT transcription complex [KO:K12580]
PAAG_11257  PAAG_01309; hypothetical protein [KO:K10643] [EC:2.3.2.27]
PAAG_11258  hypothetical protein [KO:K10643] [EC:2.3.2.27]
PAAG_04884  CCR4-NOT transcription complex subunit 8 [KO:K12581]
PAAG_03080  cell differentiation protein rcd1 [KO:K12606]
PAAG_03640  CCR4-Not complex subunit Caf16 [KO:K12608]
PAAG_00805  PH domain-containing protein [KO:K12609]
PAAG_00244  polyadenylate-binding protein [KO:K13126]
PAAG_08908  PAB-dependent poly(A)-specific ribonuclease subunit pan2 [KO:K12571] [EC:3.1.13.4]
PAAG_05385  PAB-dependent poly(A)-specific ribonuclease subunit PAN3 [KO:K12572]
PAAG_11508  PAAG_02506; hypothetical protein [KO:K12613] [EC:3.6.1.62]
PAAG_08833  ATP-dependent RNA helicase DHH1 [KO:K12614] [EC:5.6.2.7]
PAAG_02589  YjeF_N domain-containing protein [KO:K12615]
PAAG_02282  hypothetical protein [KO:K12617]
PAAG_08876  5'-3' exoribonuclease [KO:K12618] [EC:3.1.13.-]
PAAG_07103  5'-3' exoribonuclease [KO:K12619] [EC:3.1.13.-]
PAAG_00076  hypothetical protein [KO:K12620]
PAAG_01630  small nuclear ribonucleoprotein LSM2 [KO:K12621]
PAAG_02522  hypothetical protein [KO:K12622]
PAAG_00101  small nuclear ribonucleoprotein [KO:K12623]
PAAG_08979  hypothetical protein [KO:K12624]
PAAG_00845  LSM domain-containing protein [KO:K12625]
PAAG_05386  hypothetical protein [KO:K12626]
PAAG_12408  hypothetical protein [KO:K12627]
PAAG_11169  PAAG_00771; enolase [KO:K01689] [EC:4.2.1.11]
PAAG_01583  6-phosphofructokinase subunit beta [KO:K00850] [EC:2.7.1.11]
PAAG_11262  PAAG_01338; hsp7-like protein [KO:K04043]
PAAG_08059  heat shock protein [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
pbl03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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