KEGG   PATHWAY: pbv00020
Entry
pbv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus bovis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pbv00020  Citrate cycle (TCA cycle)
pbv00020

Module
pbv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pbv00020]
pbv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pbv00020]
pbv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pbv00020]
pbv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pbv00020]
Other DBs
GO: 0006099
Organism
Paenibacillus bovis [GN:pbv]
Gene
AR543_09865  citrate synthase [KO:K01647] [EC:2.3.3.1]
AR543_05490  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AR543_09870  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AR543_11795  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AR543_11800  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AR543_15155  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AR543_16860  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AR543_11170  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AR543_11165  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AR543_20540  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AR543_20535  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AR543_20545  succinate dehydrogenase [KO:K00241]
AR543_10755  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AR543_09875  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AR543_02410  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AR543_15170  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AR543_15165  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AR543_15160  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pbv00010  Glycolysis / Gluconeogenesis
pbv00053  Ascorbate and aldarate metabolism
pbv00061  Fatty acid biosynthesis
pbv00071  Fatty acid degradation
pbv00190  Oxidative phosphorylation
pbv00220  Arginine biosynthesis
pbv00250  Alanine, aspartate and glutamate metabolism
pbv00280  Valine, leucine and isoleucine degradation
pbv00350  Tyrosine metabolism
pbv00470  D-Amino acid metabolism
pbv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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