KEGG   PATHWAY: pcal00020
Entry
pcal00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Parageobacillus caldoxylosilyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcal00020  Citrate cycle (TCA cycle)
pcal00020

Module
pcal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcal00020]
pcal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcal00020]
pcal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcal00020]
pcal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcal00020]
pcal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcal00020]
Other DBs
GO: 0006099
Organism
Parageobacillus caldoxylosilyticus [GN:pcal]
Gene
BV455_02595  citZ; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
BV455_00498  citB; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BV455_02596  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BV455_01299  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BV455_00851  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BV455_00850  odhB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BV455_03045  pdhD_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BV455_03383  pdhD_3; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BV455_00805  pdhD_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BV455_00573  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BV455_00572  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BV455_00664  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
BV455_00665  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
BV455_01305  cat1; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
BV455_02670  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BV455_02671  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BV455_02669  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
BV455_01312  ttdB; L(+)-tartrate dehydratase subunit beta [KO:K01676] [EC:4.2.1.2]
BV455_01479  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BV455_02597  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BV455_01819  mqo1; putative malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
BV455_00786  cfiB_2; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
BV455_02481  pckA; Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BV455_02044  pdhA_2; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BV455_00808  pdhA_1; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BV455_02045  pdhB_2; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BV455_00807  pdhB_1; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BV455_02043  pdhC_3; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BV455_03382  pdhC_5; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BV455_03475  pdhC_6; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BV455_00403  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BV455_00806  pdhC_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BV455_03681  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
BV455_03680  porC; Pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcal00010  Glycolysis / Gluconeogenesis
pcal00053  Ascorbate and aldarate metabolism
pcal00061  Fatty acid biosynthesis
pcal00071  Fatty acid degradation
pcal00190  Oxidative phosphorylation
pcal00220  Arginine biosynthesis
pcal00250  Alanine, aspartate and glutamate metabolism
pcal00280  Valine, leucine and isoleucine degradation
pcal00350  Tyrosine metabolism
pcal00470  D-Amino acid metabolism
pcal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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