KEGG   PATHWAY: pchp00020
Entry
pchp00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas chlororaphis subsp. piscium
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pchp00020  Citrate cycle (TCA cycle)
pchp00020

Module
pchp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pchp00020]
pchp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pchp00020]
pchp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pchp00020]
pchp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pchp00020]
pchp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pchp00020]
Other DBs
GO: 0006099
Organism
Pseudomonas chlororaphis subsp. piscium [GN:pchp]
Gene
C4K32_1793  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
C4K32_2023  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C4K32_2585  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C4K32_3974  Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
C4K32_3976  Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
C4K32_1798  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C4K32_1799  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
C4K32_1800  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
C4K32_2458  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
C4K32_6268  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
C4K32_1802  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
C4K32_1801  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
C4K32_0114  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
C4K32_1796  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C4K32_1797  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
C4K32_1794  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
C4K32_1795  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
C4K32_4906  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
C4K32_4507  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
C4K32_0991  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
C4K32_3949  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
C4K32_5207  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
C4K32_6228  Pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
C4K32_6227  Pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
C4K32_0300  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C4K32_0514  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
C4K32_0513  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pchp00010  Glycolysis / Gluconeogenesis
pchp00053  Ascorbate and aldarate metabolism
pchp00061  Fatty acid biosynthesis
pchp00071  Fatty acid degradation
pchp00190  Oxidative phosphorylation
pchp00220  Arginine biosynthesis
pchp00250  Alanine, aspartate and glutamate metabolism
pchp00280  Valine, leucine and isoleucine degradation
pchp00350  Tyrosine metabolism
pchp00470  D-Amino acid metabolism
pchp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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