KEGG   PATHWAY: pcj00970
Entry
pcj00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Paraburkholderia caledonica
Class
Genetic Information Processing; Translation
Pathway map
pcj00970  Aminoacyl-tRNA biosynthesis
pcj00970

Organism
Paraburkholderia caledonica [GN:pcj]
Gene
CUJ87_06090  tRNA-Ala [KO:K14218]
CUJ87_11160  tRNA-Ala [KO:K14218]
CUJ87_00820  tRNA-Ala [KO:K14218]
CUJ87_15180  tRNA-Ala [KO:K14218]
CUJ87_16080  tRNA-Ala [KO:K14218]
CUJ87_19155  tRNA-Ala [KO:K14218]
CUJ87_20140  tRNA-Ala [KO:K14218]
CUJ87_29700  tRNA-Ala [KO:K14218]
CUJ87_12040  tRNA-Arg [KO:K14219]
CUJ87_16810  tRNA-Arg [KO:K14219]
CUJ87_04580  tRNA-Arg [KO:K14219]
CUJ87_13240  tRNA-Arg [KO:K14219]
CUJ87_13245  tRNA-Arg [KO:K14219]
CUJ87_12550  tRNA-Asn [KO:K14220]
CUJ87_12555  tRNA-Asn [KO:K14220]
CUJ87_06110  tRNA-Asp [KO:K14221]
CUJ87_06100  tRNA-Asp [KO:K14221]
CUJ87_07745  tRNA-Asp [KO:K14221]
CUJ87_12295  tRNA-Cys [KO:K14222]
CUJ87_01600  tRNA-Gln [KO:K14223]
CUJ87_06095  tRNA-Glu [KO:K14224]
CUJ87_06105  tRNA-Glu [KO:K14224]
CUJ87_16060  tRNA-Gly [KO:K14225]
CUJ87_12300  tRNA-Gly [KO:K14225]
CUJ87_12305  tRNA-Gly [KO:K14225]
CUJ87_13390  tRNA-Gly [KO:K14225]
CUJ87_07085  tRNA-His [KO:K14226]
CUJ87_11165  tRNA-Ile [KO:K14227]
CUJ87_15185  tRNA-Ile [KO:K14227]
CUJ87_16085  tRNA-Ile [KO:K14227]
CUJ87_19150  tRNA-Ile [KO:K14227]
CUJ87_20135  tRNA-Ile [KO:K14227]
CUJ87_29695  tRNA-Ile [KO:K14227]
CUJ87_05355  tRNA-Leu [KO:K14228]
CUJ87_07685  tRNA-Leu [KO:K14228]
CUJ87_11370  tRNA-Leu [KO:K14228]
CUJ87_13425  tRNA-Leu [KO:K14228]
CUJ87_06800  tRNA-Leu [KO:K14228]
CUJ87_06805  tRNA-Leu [KO:K14228]
CUJ87_02405  tRNA-Lys [KO:K14229]
CUJ87_29315  tRNA-Lys [KO:K14229]
CUJ87_00280  tRNA-Lys [KO:K14229]
CUJ87_05530  tRNA-Met [KO:K14230]
CUJ87_06990  tRNA-Met [KO:K14230]
CUJ87_14285  tRNA-Met [KO:K14230]
CUJ87_00370  tRNA-Phe [KO:K14231]
CUJ87_11650  tRNA-Pro [KO:K14232]
CUJ87_14975  tRNA-Pro [KO:K14232]
CUJ87_12085  tRNA-Pro [KO:K14232]
CUJ87_13290  tRNA-Ser [KO:K14233]
CUJ87_06010  tRNA-Ser [KO:K14233]
CUJ87_10595  tRNA-Ser [KO:K14233]
CUJ87_04190  tRNA-Ser [KO:K14233]
CUJ87_15455  tRNA-Thr [KO:K14234]
CUJ87_13200  tRNA-Thr [KO:K14234]
CUJ87_16055  tRNA-Thr [KO:K14234]
CUJ87_16045  tRNA-Trp [KO:K14235]
CUJ87_16065  tRNA-Tyr [KO:K14236]
CUJ87_07740  tRNA-Val [KO:K14237]
CUJ87_11700  tRNA-Val [KO:K14237]
CUJ87_29770  tRNA-Val [KO:K14237]
CUJ87_12225  tRNA-Val [KO:K14237]
CUJ87_06085  glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
CUJ87_00430  Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [KO:K02433] [EC:6.3.5.6 6.3.5.7]
CUJ87_13030  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
CUJ87_25870  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
CUJ87_27375  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
CUJ87_00435  gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B [KO:K02434] [EC:6.3.5.6 6.3.5.7]
CUJ87_00425  Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
CUJ87_12005  glutamine--tRNA ligase [KO:K01886] [EC:6.1.1.18]
CUJ87_11980  alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
CUJ87_01935  aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
CUJ87_02075  glyQ; glycine--tRNA ligase subunit alpha [KO:K01878] [EC:6.1.1.14]
CUJ87_02070  glycine--tRNA ligase subunit beta [KO:K01879] [EC:6.1.1.14]
CUJ87_11690  threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
CUJ87_04185  serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
CUJ87_05985  cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
CUJ87_04055  methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
CUJ87_07270  formyltransferase [KO:K00604] [EC:2.1.2.9]
CUJ87_00335  methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
CUJ87_11865  valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
CUJ87_14650  leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
CUJ87_13605  isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
CUJ87_05670  lysS; lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
CUJ87_01100  arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
CUJ87_14930  proline--tRNA ligase [KO:K01881] [EC:6.1.1.15]
CUJ87_05825  histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
CUJ87_11670  phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
CUJ87_11665  phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
CUJ87_14510  tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
CUJ87_05775  tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
pcj00250  Alanine, aspartate and glutamate metabolism
pcj00260  Glycine, serine and threonine metabolism
pcj00270  Cysteine and methionine metabolism
pcj00290  Valine, leucine and isoleucine biosynthesis
pcj00300  Lysine biosynthesis
pcj00330  Arginine and proline metabolism
pcj00340  Histidine metabolism
pcj00380  Tryptophan metabolism
pcj00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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