KEGG   PATHWAY: pcq00020
Entry
pcq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas citronellolis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcq00020  Citrate cycle (TCA cycle)
pcq00020

Module
pcq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcq00020]
pcq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcq00020]
pcq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcq00020]
pcq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcq00020]
pcq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcq00020]
Other DBs
GO: 0006099
Organism
Pseudomonas citronellolis [GN:pcq]
Gene
PcP3B5_23700  gltA_1; Citrate synthase [KO:K01647] [EC:2.3.3.1]
PcP3B5_35780  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
PcP3B5_22040  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PcP3B5_38030  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
PcP3B5_38040  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
PcP3B5_23760  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PcP3B5_23770  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
PcP3B5_36010  lpdV; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PcP3B5_23780  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PcP3B5_23810  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
PcP3B5_23800  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
PcP3B5_01650  cat1; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
PcP3B5_23730  sdhA_1; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PcP3B5_27630  sdhB_2; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PcP3B5_23740  sdhB_1; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PcP3B5_23710  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
PcP3B5_23720  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
PcP3B5_52920  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
PcP3B5_44100  fumC_2; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
PcP3B5_11590  fumC_1; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
PcP3B5_52530  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PcP3B5_02750  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01959] [EC:6.4.1.1]
PcP3B5_02760  cfiA; 2-oxoglutarate carboxylase large subunit [KO:K01960] [EC:6.4.1.1]
PcP3B5_03470  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
PcP3B5_37430  aceE_2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
PcP3B5_30860  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
PcP3B5_57680  aceE_3; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
PcP3B5_37420  aceF_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
PcP3B5_30850  aceF_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
PcP3B5_57690  aceF_3; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcq00010  Glycolysis / Gluconeogenesis
pcq00053  Ascorbate and aldarate metabolism
pcq00061  Fatty acid biosynthesis
pcq00071  Fatty acid degradation
pcq00190  Oxidative phosphorylation
pcq00220  Arginine biosynthesis
pcq00250  Alanine, aspartate and glutamate metabolism
pcq00280  Valine, leucine and isoleucine degradation
pcq00350  Tyrosine metabolism
pcq00470  D-Amino acid metabolism
pcq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system