KEGG   PATHWAY: pcx00020
Entry
pcx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus crassostreae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcx00020  Citrate cycle (TCA cycle)
pcx00020

Module
pcx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcx00020]
pcx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcx00020]
pcx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcx00020]
pcx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcx00020]
Other DBs
GO: 0006099
Organism
Paenibacillus crassostreae [GN:pcx]
Gene
LPB68_17880  citrate synthase [KO:K01647] [EC:2.3.3.1]
LPB68_15955  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
LPB68_17885  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LPB68_07730  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LPB68_07725  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
LPB68_03930  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPB68_01975  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPB68_19775  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LPB68_19770  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LPB68_06960  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LPB68_06955  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LPB68_06965  succinate dehydrogenase [KO:K00241]
LPB68_13440  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
LPB68_17890  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LPB68_12645  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LPB68_01990  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LPB68_01985  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
LPB68_01980  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
LPB68_20285  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
LPB68_20280  ferredoxin [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcx00010  Glycolysis / Gluconeogenesis
pcx00053  Ascorbate and aldarate metabolism
pcx00061  Fatty acid biosynthesis
pcx00071  Fatty acid degradation
pcx00190  Oxidative phosphorylation
pcx00220  Arginine biosynthesis
pcx00250  Alanine, aspartate and glutamate metabolism
pcx00280  Valine, leucine and isoleucine degradation
pcx00350  Tyrosine metabolism
pcx00470  D-Amino acid metabolism
pcx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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