KEGG   PATHWAY: peu00020
Entry
peu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Populus euphratica (Euphrates poplar)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
peu00020  Citrate cycle (TCA cycle)
peu00020

Module
peu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:peu00020]
peu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:peu00020]
peu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:peu00020]
Other DBs
GO: 0006099
Organism
Populus euphratica (Euphrates poplar) [GN:peu]
Gene
105113273  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
105109319  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
105132119  LOW QUALITY PROTEIN: citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
105132358  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
105122521  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
105125203  ATP-citrate synthase alpha chain protein 2-like isoform X1 [KO:K01648] [EC:2.3.3.8]
105135700  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
105141670  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
105142723  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
105124086  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
105141713  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
105135288  isocitrate dehydrogenase [NADP]-like isoform X1 [KO:K00031] [EC:1.1.1.42]
105118257  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
105112062  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
105116445  isocitrate dehydrogenase [NADP]-like isoform X1 [KO:K00031] [EC:1.1.1.42]
105116268  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
105113020  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
105118999  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
105124016  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
105108334  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
105142551  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
105115310  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
105136957  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
105125321  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
105127504  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
105127669  LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
105119062  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
105141254  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
105118992  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
105122055  LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [KO:K00382] [EC:1.8.1.4]
105114975  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
105122725  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
105115793  LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
105142015  succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105110360  succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105123937  succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105115284  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105125615  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105110408  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
105126570  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
105140198  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
105113344  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
105129924  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
105120762  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
105120763  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
105129446  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
105120034  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
105123285  malate dehydrogenase, chloroplastic-like isoform X1 [KO:K00026] [EC:1.1.1.37]
105123286  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
105139985  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
105109696  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
105112651  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105107256  malate dehydrogenase, chloroplastic-like isoform X1 [KO:K00026] [EC:1.1.1.37]
105140820  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
105115016  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105120290  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
105123788  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
105120459  phosphoenolpyruvate carboxykinase [ATP]-like [KO:K01610] [EC:4.1.1.49]
105123811  phosphoenolpyruvate carboxykinase [ATP]-like isoform X1 [KO:K01610] [EC:4.1.1.49]
105132390  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
105112575  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
105126251  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
105110004  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
105118701  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
105119837  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
105123061  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
105133740  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
105108941  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
105115545  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
105115255  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
105113514  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
105135124  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
105115070  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
peu00010  Glycolysis / Gluconeogenesis
peu00053  Ascorbate and aldarate metabolism
peu00061  Fatty acid biosynthesis
peu00062  Fatty acid elongation
peu00071  Fatty acid degradation
peu00190  Oxidative phosphorylation
peu00220  Arginine biosynthesis
peu00250  Alanine, aspartate and glutamate metabolism
peu00280  Valine, leucine and isoleucine degradation
peu00350  Tyrosine metabolism
peu00470  D-Amino acid metabolism
peu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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