KEGG   PATHWAY: pfer00030
Entry
pfer00030                   Pathway                                
Name
Pentose phosphate pathway - Paludibaculum fermentans
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfer00030  Pentose phosphate pathway
pfer00030

Module
pfer_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pfer00030]
pfer_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pfer00030]
pfer_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pfer00030]
pfer_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pfer00030]
Other DBs
GO: 0006098
Organism
Paludibaculum fermentans [GN:pfer]
Gene
IRI77_00705  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
IRI77_03010  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
IRI77_03020  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
IRI77_30100  lactonase family protein [KO:K07404] [EC:3.1.1.31]
IRI77_34525  lactonase family protein [KO:K07404] [EC:3.1.1.31]
IRI77_03060  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
IRI77_08985  gnd; decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
IRI77_10510  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
IRI77_17410  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
IRI77_23215  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
IRI77_01125  transketolase [KO:K00615] [EC:2.2.1.1]
IRI77_01130  transketolase family protein [KO:K00615] [EC:2.2.1.1]
IRI77_07465  transketolase [KO:K00615] [EC:2.2.1.1]
IRI77_07470  transketolase family protein [KO:K00615] [EC:2.2.1.1]
IRI77_08830  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
IRI77_32320  transketolase [KO:K00615] [EC:2.2.1.1]
IRI77_23485  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
IRI77_20065  rpiA; ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
IRI77_12355  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
IRI77_18570  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
IRI77_28925  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
IRI77_03220  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
IRI77_03045  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
IRI77_18575  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
IRI77_33610  hypothetical protein [KO:K01619] [EC:4.1.2.4]
IRI77_36945  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
IRI77_17510  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
IRI77_06930  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
IRI77_30205  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
IRI77_07425  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
IRI77_06965  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
IRI77_16710  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
IRI77_00125  SDR family oxidoreductase [KO:K00034] [EC:1.1.1.47]
IRI77_16115  glucose 1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
IRI77_01345  alcohol dehydrogenase catalytic domain-containing protein [KO:K22969] [EC:1.1.1.47]
IRI77_37285  PQQ-binding-like beta-propeller repeat protein [KO:K00117] [EC:1.1.5.2]
IRI77_31410  pyrroloquinoline quinone-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
IRI77_01200  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
IRI77_13460  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
IRI77_21255  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
IRI77_26745  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
IRI77_10460  gluconate 2-dehydrogenase subunit 3 family protein [KO:K06152] [EC:1.1.99.3]
IRI77_29990  gluconate 2-dehydrogenase subunit 3 family protein [KO:K06152] [EC:1.1.99.3]
IRI77_04640  sugar kinase [KO:K00874] [EC:2.7.1.45]
IRI77_08990  sugar kinase [KO:K00874] [EC:2.7.1.45]
IRI77_20630  glycerate kinase [KO:K11529] [EC:2.7.1.165]
IRI77_10205  aminotransferase class V-fold PLP-dependent enzyme [KO:K17468] [EC:4.3.1.29]
IRI77_23105  class I fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
IRI77_32635  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
IRI77_29340  ATP-dependent 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
IRI77_24825  1-phosphofructokinase family hexose kinase [KO:K16370] [EC:2.7.1.11]
IRI77_07585  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pfer00010  Glycolysis / Gluconeogenesis
pfer00040  Pentose and glucuronate interconversions
pfer00052  Galactose metabolism
pfer00230  Purine metabolism
pfer00240  Pyrimidine metabolism
pfer00340  Histidine metabolism
pfer00630  Glyoxylate and dicarboxylate metabolism
pfer00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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