KEGG   PATHWAY: pfo00020
Entry
pfo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas fluorescens Pf0-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfo00020  Citrate cycle (TCA cycle)
pfo00020

Module
pfo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfo00020]
pfo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfo00020]
pfo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfo00020]
pfo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfo00020]
pfo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfo00020]
Other DBs
GO: 0006099
Organism
Pseudomonas fluorescens Pf0-1 [GN:pfo]
Gene
Pfl01_1609  citrate synthase [KO:K01647] [EC:2.3.3.1]
Pfl01_3890  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Pfl01_3395  aconitate hydrase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Pfl01_3593  icd; isocitrate dehydrogenase, NADP [KO:K00031] [EC:1.1.1.42]
Pfl01_3594  icd; isocitrate dehydrogenase, NADP [KO:K00031] [EC:1.1.1.42]
Pfl01_1614  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Pfl01_1615  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Pfl01_5671  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pfl01_3466  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pfl01_1616  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pfl01_1618  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
Pfl01_1617  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
Pfl01_0111  putative hydrolase [KO:K18118] [EC:2.8.3.18]
Pfl01_1612  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Pfl01_1613  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Pfl01_1610  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
Pfl01_1611  putative succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
Pfl01_4452  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
Pfl01_0849  fumC1; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Pfl01_4093  fumC; fumarase C (fumarate hydratase Class II) [KO:K01679] [EC:4.2.1.2]
Pfl01_4724  putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Pfl01_2102  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Pfl01_5640  pycA; acetyl-CoA carboxylase carboxyltransferase subunit alpha [KO:K01959] [EC:6.4.1.1]
Pfl01_5639  oadA; 3 oxaloacetate decarboxylase alpha chain [KO:K01960] [EC:6.4.1.1]
Pfl01_0268  phosphoenolpyruvate carboxykinase, ATP [KO:K01610] [EC:4.1.1.49]
Pfl01_0463  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Pfl01_0462  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfo00010  Glycolysis / Gluconeogenesis
pfo00053  Ascorbate and aldarate metabolism
pfo00061  Fatty acid biosynthesis
pfo00071  Fatty acid degradation
pfo00190  Oxidative phosphorylation
pfo00220  Arginine biosynthesis
pfo00250  Alanine, aspartate and glutamate metabolism
pfo00280  Valine, leucine and isoleucine degradation
pfo00350  Tyrosine metabolism
pfo00470  D-Amino acid metabolism
pfo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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