KEGG   PATHWAY: pfor00020
Entry
pfor00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Poecilia formosa (Amazon molly)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfor00020  Citrate cycle (TCA cycle)
pfor00020

Module
pfor_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfor00020]
pfor_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfor00020]
pfor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfor00020]
pfor_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfor00020]
pfor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfor00020]
Other DBs
GO: 0006099
Organism
Poecilia formosa (Amazon molly) [GN:pfor]
Gene
103139138  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
103155717  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
103142184  acly; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
103132151  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
103153419  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
103143296  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
103147849  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
103135997  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
103156578  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
103139599  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
103141159  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
103141234  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
103129407  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
103129637  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
103151744  ogdh; 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
103138695  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
103136158  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
103149386  dld; dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
103137872  suclg1; succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X2 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
103130645  sucla2; succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
103152907  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
103140702  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
103130297  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
103150475  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
103137990  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
103156788  sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
103156877  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
103150763  mdh1; malate dehydrogenase, cytoplasmic isoform X2 [KO:K00025] [EC:1.1.1.37]
103152461  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
103136570  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
103136730  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
103129512  pc; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
103135318  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
103155729  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
103130055  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X2 [KO:K00161] [EC:1.2.4.1]
103141539  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
103130802  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
103141176  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfor00010  Glycolysis / Gluconeogenesis
pfor00053  Ascorbate and aldarate metabolism
pfor00061  Fatty acid biosynthesis
pfor00062  Fatty acid elongation
pfor00071  Fatty acid degradation
pfor00190  Oxidative phosphorylation
pfor00220  Arginine biosynthesis
pfor00250  Alanine, aspartate and glutamate metabolism
pfor00280  Valine, leucine and isoleucine degradation
pfor00350  Tyrosine metabolism
pfor00470  D-Amino acid metabolism
pfor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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