KEGG   PATHWAY: pfuc00020
Entry
pfuc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Polistes fuscatus (common paper wasp)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfuc00020  Citrate cycle (TCA cycle)
pfuc00020

Module
pfuc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfuc00020]
pfuc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfuc00020]
pfuc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfuc00020]
pfuc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfuc00020]
pfuc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfuc00020]
Other DBs
GO: 0006099
Organism
Polistes fuscatus (common paper wasp) [GN:pfuc]
Gene
122525044  LOW QUALITY PROTEIN: probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
122519262  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
122515481  LOW QUALITY PROTEIN: ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
122517050  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
122515177  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
122519429  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
122519027  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
122522471  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
122515756  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
122517889  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
122516201  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
122513786  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
122515490  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
122525979  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122516827  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122515072  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
122515079  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
122524741  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like isoform X1 [KO:K00235] [EC:1.3.5.1]
122516947  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
122522982  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
122520140  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
122521075  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
122523450  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
122524276  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
122524806  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
122517149  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122523196  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
122515801  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122520054  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
122521033  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
122516006  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
122514479  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
122515785  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
122514512  pyruvate dehydrogenase protein X component, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
122523018  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfuc00010  Glycolysis / Gluconeogenesis
pfuc00053  Ascorbate and aldarate metabolism
pfuc00061  Fatty acid biosynthesis
pfuc00062  Fatty acid elongation
pfuc00071  Fatty acid degradation
pfuc00190  Oxidative phosphorylation
pfuc00220  Arginine biosynthesis
pfuc00250  Alanine, aspartate and glutamate metabolism
pfuc00280  Valine, leucine and isoleucine degradation
pfuc00350  Tyrosine metabolism
pfuc00470  D-Amino acid metabolism
pfuc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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