KEGG   PATHWAY: pgis00630
Entry
pgis00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia ginsengisoli
Class
Metabolism; Carbohydrate metabolism
Pathway map
pgis00630  Glyoxylate and dicarboxylate metabolism
pgis00630

Module
pgis_M00012  Glyoxylate cycle [PATH:pgis00630]
pgis_M00621  Glycine cleavage system [PATH:pgis00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia ginsengisoli [GN:pgis]
Gene
I6I06_02700  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
I6I06_24130  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
I6I06_24660  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
I6I06_01040  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
I6I06_06355  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
I6I06_02680  malate synthase A [KO:K01638] [EC:2.3.3.9]
I6I06_04130  malate synthase G [KO:K01638] [EC:2.3.3.9]
I6I06_17205  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I6I06_15485  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
I6I06_17240  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
I6I06_17965  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
I6I06_23125  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
I6I06_24020  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
I6I06_17180  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
I6I06_10370  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I6I06_17940  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I6I06_25855  thiolase family protein [KO:K00626] [EC:2.3.1.9]
I6I06_04375  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
I6I06_04660  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
I6I06_04690  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I6I06_05460  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I6I06_04685  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
I6I06_02045  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
I6I06_09135  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
I6I06_09140  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
I6I06_09145  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
I6I06_09175  catalase [KO:K03781] [EC:1.11.1.6]
I6I06_21715  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
I6I06_23625  katE; catalase HPII [KO:K03781] [EC:1.11.1.6]
I6I06_10425  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
I6I06_00125  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
I6I06_03330  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
I6I06_18730  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
I6I06_13925  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
I6I06_22675  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
I6I06_00170  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
I6I06_22545  ribulose-bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
I6I06_22540  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
I6I06_08790  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
I6I06_28265  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
I6I06_24520  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
I6I06_01485  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
I6I06_08920  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
I6I06_22235  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
I6I06_11835  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
I6I06_11845  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
I6I06_01575  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6I06_05605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6I06_11840  gcvH; glycine cleavage system protein GcvH [KO:K02437]
I6I06_05005  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
I6I06_05010  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
I6I06_21080  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
I6I06_05015  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
I6I06_04490  glycerate kinase [KO:K00865] [EC:2.7.1.165]
I6I06_21425  fumarate hydratase C-terminal domain-containing protein [KO:K03780] [EC:4.2.1.32]
I6I06_18875  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
I6I06_22130  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
I6I06_14560  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
I6I06_16415  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
I6I06_16420  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
I6I06_18250  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
I6I06_16425  SLBB domain-containing protein [KO:K00124]
I6I06_18255  fdxH; formate dehydrogenase subunit beta [KO:K00124]
I6I06_16430  NAD(P)H-dependent oxidoreductase subunit E [KO:K00127]
I6I06_18260  formate dehydrogenase subunit gamma [KO:K00127]
I6I06_15270  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
I6I06_09695  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
I6I06_22285  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
I6I06_06040  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
I6I06_29195  AMP-binding protein [KO:K22133] [EC:6.2.1.8]
I6I06_25645  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pgis00010  Glycolysis / Gluconeogenesis
pgis00020  Citrate cycle (TCA cycle)
pgis00030  Pentose phosphate pathway
pgis00053  Ascorbate and aldarate metabolism
pgis00071  Fatty acid degradation
pgis00230  Purine metabolism
pgis00250  Alanine, aspartate and glutamate metabolism
pgis00260  Glycine, serine and threonine metabolism
pgis00620  Pyruvate metabolism
pgis00710  Carbon fixation in photosynthetic organisms
pgis00750  Vitamin B6 metabolism
pgis00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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