KEGG   PATHWAY: pgw00020
Entry
pgw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pectinophora gossypiella (pink bollworm)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pgw00020  Citrate cycle (TCA cycle)
pgw00020

Module
pgw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pgw00020]
pgw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pgw00020]
pgw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pgw00020]
pgw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pgw00020]
pgw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pgw00020]
Other DBs
GO: 0006099
Organism
Pectinophora gossypiella (pink bollworm) [GN:pgw]
Gene
126379803  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
126378821  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
126369209  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
126379389  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
126382038  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
126367879  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
126377136  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
126379224  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
126370878  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
126366825  2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
126367625  2-oxoglutarate dehydrogenase complex component E1-like [KO:K00164] [EC:1.2.4.2]
126378907  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
126375093  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
126367161  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
126380359  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
126381767  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
126381862  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
126380611  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
126373560  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
126377180  uncharacterized protein LOC126377180 [KO:K00235] [EC:1.3.5.1]
126380612  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
126371540  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
126375336  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
126369648  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
126369677  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
126373304  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
126368453  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
126376276  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
126371996  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
126374088  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
126366451  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
126366452  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
126368202  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
126373067  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
126376532  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
126375521  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
126375772  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
126370257  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
126373568  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pgw00010  Glycolysis / Gluconeogenesis
pgw00053  Ascorbate and aldarate metabolism
pgw00061  Fatty acid biosynthesis
pgw00062  Fatty acid elongation
pgw00071  Fatty acid degradation
pgw00190  Oxidative phosphorylation
pgw00220  Arginine biosynthesis
pgw00250  Alanine, aspartate and glutamate metabolism
pgw00280  Valine, leucine and isoleucine degradation
pgw00350  Tyrosine metabolism
pgw00470  D-Amino acid metabolism
pgw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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