KEGG   PATHWAY: pgy00030
Entry
pgy00030                    Pathway                                
Name
Pentose phosphate pathway - Pseudomonas glycinae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pgy00030  Pentose phosphate pathway
pgy00030

Module
pgy_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pgy00030]
pgy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pgy00030]
pgy_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pgy00030]
pgy_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pgy00030]
pgy_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pgy00030]
Other DBs
GO: 0006098
Organism
Pseudomonas glycinae [GN:pgy]
Gene
AWU82_16170  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
AWU82_14255  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AWU82_25810  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AWU82_25805  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
AWU82_09440  lactonase family protein [KO:K07404] [EC:3.1.1.31]
AWU82_14260  gnd; 6-phosphogluconate dehydrogenase (decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
AWU82_09280  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
AWU82_08525  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
AWU82_13615  transketolase [KO:K00615] [EC:2.2.1.1]
AWU82_13620  transketolase [KO:K00615] [EC:2.2.1.1]
AWU82_11860  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
AWU82_07940  ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
AWU82_02655  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
AWU82_13845  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
AWU82_07255  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
AWU82_25330  phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
AWU82_27895  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
AWU82_25870  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
AWU82_25800  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AWU82_14695  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
AWU82_02170  3-oxoacyl-ACP reductase [KO:K00034] [EC:1.1.1.47]
AWU82_25295  GMC family oxidoreductase [KO:K19813] [EC:1.1.5.9]
AWU82_26960  glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
AWU82_13485  gluconolactonase [KO:K01053] [EC:3.1.1.17]
AWU82_05990  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
AWU82_05985  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
AWU82_19190  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AWU82_13115  sugar kinase [KO:K11441] [EC:2.7.1.13]
AWU82_13105  D-glycerate dehydrogenase [KO:K00032] [EC:1.1.1.43]
AWU82_25675  gluconokinase [KO:K00851] [EC:2.7.1.12]
AWU82_12780  sugar kinase [KO:K00874] [EC:2.7.1.45]
AWU82_00925  glycerate kinase [KO:K11529] [EC:2.7.1.165]
AWU82_19430  trxB; thioredoxin-disulfide reductase [KO:K22345] [EC:4.3.1.9]
AWU82_08550  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
AWU82_21580  fructose 1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pgy00010  Glycolysis / Gluconeogenesis
pgy00040  Pentose and glucuronate interconversions
pgy00052  Galactose metabolism
pgy00230  Purine metabolism
pgy00240  Pyrimidine metabolism
pgy00340  Histidine metabolism
pgy00630  Glyoxylate and dicarboxylate metabolism
pgy00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

DBGET integrated database retrieval system