KEGG   PATHWAY: phc00020
Entry
phc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Planococcus halocryophilus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
phc00020  Citrate cycle (TCA cycle)
phc00020

Module
phc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:phc00020]
phc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:phc00020]
phc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:phc00020]
phc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:phc00020]
phc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:phc00020]
Other DBs
GO: 0006099
Organism
Planococcus halocryophilus [GN:phc]
Gene
BBI08_02265  citrate synthase [KO:K01647] [EC:2.3.3.1]
BBI08_04540  citrate synthase [KO:K01647] [EC:2.3.3.1]
BBI08_13390  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BBI08_03670  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BBI08_02270  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BBI08_04840  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BBI08_04835  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BBI08_03495  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BBI08_07365  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BBI08_06755  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BBI08_06760  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BBI08_10945  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
BBI08_10955  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
BBI08_02515  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BBI08_02520  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BBI08_02510  succinate dehydrogenase [KO:K00241]
BBI08_14630  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BBI08_02275  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BBI08_12130  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BBI08_07285  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BBI08_01715  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BBI08_07380  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BBI08_07375  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BBI08_07370  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
phc00010  Glycolysis / Gluconeogenesis
phc00053  Ascorbate and aldarate metabolism
phc00061  Fatty acid biosynthesis
phc00071  Fatty acid degradation
phc00190  Oxidative phosphorylation
phc00220  Arginine biosynthesis
phc00250  Alanine, aspartate and glutamate metabolism
phc00280  Valine, leucine and isoleucine degradation
phc00350  Tyrosine metabolism
phc00470  D-Amino acid metabolism
phc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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