KEGG   PATHWAY: phom00020
Entry
phom00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas hormoni
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
phom00020  Citrate cycle (TCA cycle)
phom00020

Module
phom_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:phom00020]
phom_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:phom00020]
phom_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:phom00020]
phom_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:phom00020]
phom_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:phom00020]
Other DBs
GO: 0006099
Organism
Pseudomonas hormoni [GN:phom]
Gene
KJF94_05045  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KJF94_06220  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KJF94_12605  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KJF94_15495  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KJF94_15500  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KJF94_05070  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KJF94_05075  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KJF94_12860  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KJF94_26420  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KJF94_05080  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KJF94_05090  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KJF94_05085  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KJF94_27095  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
KJF94_05060  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KJF94_05065  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KJF94_05050  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KJF94_05055  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KJF94_20460  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KJF94_17985  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KJF94_01065  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KJF94_13265  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KJF94_21595  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KJF94_08935  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KJF94_26255  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
KJF94_26250  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
KJF94_27740  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KJF94_28940  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KJF94_09120  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
KJF94_28935  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
phom00010  Glycolysis / Gluconeogenesis
phom00053  Ascorbate and aldarate metabolism
phom00061  Fatty acid biosynthesis
phom00071  Fatty acid degradation
phom00190  Oxidative phosphorylation
phom00220  Arginine biosynthesis
phom00250  Alanine, aspartate and glutamate metabolism
phom00280  Valine, leucine and isoleucine degradation
phom00350  Tyrosine metabolism
phom00470  D-Amino acid metabolism
phom00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system