KEGG   PATHWAY: phu00020
Entry
phu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pediculus humanus corporis (human body louse)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
phu00020  Citrate cycle (TCA cycle)
phu00020

Module
phu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:phu00020]
phu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:phu00020]
phu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:phu00020]
phu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:phu00020]
phu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:phu00020]
Other DBs
GO: 0006099
Organism
Pediculus humanus corporis (human body louse) [GN:phu]
Gene
Phum_PHUM397340  citrate synthase, putative [KO:K01647] [EC:2.3.3.1]
Phum_PHUM337470  ATP-citrate synthase, putative [KO:K01648] [EC:2.3.3.8]
Phum_PHUM449620  aconitase, putative [KO:K01681] [EC:4.2.1.3]
Phum_PHUM303350  aconitate hydratase, putative [KO:K01681] [EC:4.2.1.3]
Phum_PHUM450200  isocitrate dehydrogenase NADP, putative [KO:K00031] [EC:1.1.1.42]
Phum_PHUM098590  isocitrate dehydrogenase, putative [KO:K00031] [EC:1.1.1.42]
Phum_PHUM425180  isocitrate dehydrogenase NAD, subunit gammaputative [KO:K00030] [EC:1.1.1.41]
Phum_PHUM417630  isocitrate dehydrogenase NAD, subunit alphaputative [KO:K00030] [EC:1.1.1.41]
Phum_PHUM420870  isocitrate dehydrogenase NAD subunit beta, putative [KO:K00030] [EC:1.1.1.41]
Phum_PHUM376810  isocitrate dehydrogenase, putative [KO:K00030] [EC:1.1.1.41]
Phum_PHUM304130  2-oxoglutarate dehydrogenase, putative [KO:K00164] [EC:1.2.4.2]
Phum_PHUM601630  2-oxoglutarate dehydrogenase, putative [KO:K00164] [EC:1.2.4.2]
Phum_PHUM514810  Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase, putative [KO:K00658] [EC:2.3.1.61]
Phum_PHUM336850  Dihydrolipoyl dehydrogenase, putative [KO:K00382] [EC:1.8.1.4]
Phum_PHUM173270  succinyl-CoA ligase subunit alpha, putative [KO:K01899] [EC:6.2.1.4 6.2.1.5]
Phum_PHUM148770  succinate-CoA ligase, beta subunit, putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
Phum_PHUM168040  succinate-CoA ligase, beta subunit, putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
Phum_PHUM530140  succinate dehydrogenase, flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
Phum_PHUM612230  succinate dehydrogenase, iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
Phum_PHUM517040  succinate dehydrogenase, cytochrome B560 subunit [KO:K00236]
Phum_PHUM459220  succinate dehydrogenase, cytochrome B small subunit [KO:K00237]
Phum_PHUM229900  fumarate hydratase, putative [KO:K01679] [EC:4.2.1.2]
Phum_PHUM084760  malate dehydrogenase, putative [KO:K00025] [EC:1.1.1.37]
Phum_PHUM154200  malate dehydrogenase, putative [KO:K00025] [EC:1.1.1.37]
Phum_PHUM590780  malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
Phum_PHUM401560  malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
Phum_PHUM065800  malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
Phum_PHUM339790  malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
Phum_PHUM127890  malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
Phum_PHUM604790  pyruvate carboxylase, putative [KO:K01958] [EC:6.4.1.1]
Phum_PHUM368600  phosphoenolpyruvate carboxykinase, putative [KO:K01596] [EC:4.1.1.32]
Phum_PHUM009780  pyruvate dehydrogenase E1 component alpha [KO:K00161] [EC:1.2.4.1]
Phum_PHUM029050  pyruvate dehydrogenase E1 component beta [KO:K00162] [EC:1.2.4.1]
Phum_PHUM042350  Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [KO:K00627] [EC:2.3.1.12]
Phum_PHUM261830  Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
phu00010  Glycolysis / Gluconeogenesis
phu00053  Ascorbate and aldarate metabolism
phu00061  Fatty acid biosynthesis
phu00062  Fatty acid elongation
phu00071  Fatty acid degradation
phu00190  Oxidative phosphorylation
phu00220  Arginine biosynthesis
phu00250  Alanine, aspartate and glutamate metabolism
phu00280  Valine, leucine and isoleucine degradation
phu00350  Tyrosine metabolism
phu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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