KEGG   PATHWAY: phv00020
Entry
phv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas hamedanensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
phv00020  Citrate cycle (TCA cycle)
phv00020

Module
phv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:phv00020]
phv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:phv00020]
phv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:phv00020]
phv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:phv00020]
phv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:phv00020]
Other DBs
GO: 0006099
Organism
Pseudomonas hamedanensis [GN:phv]
Gene
HU739_009560  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HU739_000160  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HU739_002140  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HU739_001495  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HU739_001500  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HU739_009535  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HU739_009530  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HU739_009525  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HU739_017895  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HU739_001970  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HU739_009515  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HU739_009520  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HU739_017035  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
HU739_009545  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HU739_009540  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HU739_009555  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HU739_009550  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HU739_022960  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HU739_013245  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HU739_021065  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HU739_006830  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HU739_007055  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HU739_024285  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HU739_018045  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
HU739_018050  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
HU739_016300  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HU739_015245  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HU739_021565  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HU739_015250  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
phv00010  Glycolysis / Gluconeogenesis
phv00053  Ascorbate and aldarate metabolism
phv00061  Fatty acid biosynthesis
phv00071  Fatty acid degradation
phv00190  Oxidative phosphorylation
phv00220  Arginine biosynthesis
phv00250  Alanine, aspartate and glutamate metabolism
phv00280  Valine, leucine and isoleucine degradation
phv00350  Tyrosine metabolism
phv00470  D-Amino acid metabolism
phv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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