KEGG   PATHWAY: pib00020
Entry
pib00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus ihbetae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pib00020  Citrate cycle (TCA cycle)
pib00020

Module
pib_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pib00020]
pib_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pib00020]
pib_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pib00020]
pib_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pib00020]
Other DBs
GO: 0006099
Organism
Paenibacillus ihbetae [GN:pib]
Gene
BBD41_21030  citrate synthase [KO:K01647] [EC:2.3.3.1]
BBD41_10535  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BBD41_21035  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BBD41_25395  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BBD41_25400  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BBD41_04460  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BBD41_02860  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BBD41_24520  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BBD41_24515  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BBD41_18960  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BBD41_18965  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BBD41_18955  succinate dehydrogenase [KO:K00241]
BBD41_21055  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BBD41_15865  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BBD41_21040  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BBD41_00130  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BBD41_02875  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BBD41_02870  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
BBD41_02865  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pib00010  Glycolysis / Gluconeogenesis
pib00053  Ascorbate and aldarate metabolism
pib00061  Fatty acid biosynthesis
pib00071  Fatty acid degradation
pib00190  Oxidative phosphorylation
pib00220  Arginine biosynthesis
pib00250  Alanine, aspartate and glutamate metabolism
pib00280  Valine, leucine and isoleucine degradation
pib00350  Tyrosine metabolism
pib00470  D-Amino acid metabolism
pib00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system