KEGG   PATHWAY: pih00020
Entry
pih00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus sp. IHBB 10380
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pih00020  Citrate cycle (TCA cycle)
pih00020

Module
pih_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pih00020]
pih_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pih00020]
pih_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pih00020]
pih_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pih00020]
Other DBs
GO: 0006099
Organism
Paenibacillus sp. IHBB 10380 [GN:pih]
Gene
UB51_15170  citrate synthase [KO:K01647] [EC:2.3.3.1]
UB51_25885  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
UB51_15165  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
UB51_15985  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
UB51_15980  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
UB51_05025  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
UB51_15000  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
UB51_07370  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
UB51_12685  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
UB51_12690  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
UB51_01785  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
UB51_01790  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
UB51_01780  succinate dehydrogenase [KO:K00241]
UB51_20735  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
UB51_15160  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
UB51_07355  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
UB51_07360  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
UB51_07365  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
UB51_12175  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
UB51_12180  ferredoxin [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pih00010  Glycolysis / Gluconeogenesis
pih00053  Ascorbate and aldarate metabolism
pih00061  Fatty acid biosynthesis
pih00071  Fatty acid degradation
pih00190  Oxidative phosphorylation
pih00220  Arginine biosynthesis
pih00250  Alanine, aspartate and glutamate metabolism
pih00280  Valine, leucine and isoleucine degradation
pih00350  Tyrosine metabolism
pih00470  D-Amino acid metabolism
pih00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system